<?xml version='1.0'?>
<!DOCTYPE art SYSTEM 'http://www.biomedcentral.com/xml/article.dtd'>
<art><ui>ar3890</ui><ji>1478-6354</ji><fm>
<dochead>Research article</dochead>
<bibl>
<title>
<p>Analysis of the association between CD40 and CD40 ligand polymorphisms and systemic sclerosis</p>
</title>
<aug>
<au id="A1" ca="yes"><snm>Teruel</snm><fnm>Mar&#237;a</fnm><insr iid="I1"/><email>mteruel@ipb.csic.es</email></au>
<au id="A2"><snm>Simeon</snm><mi>P</mi><fnm>Carmen</fnm><insr iid="I2"/><email>cpsimeon@vhebron.net</email></au>
<au id="A3"><snm>Broen</snm><fnm>Jasper</fnm><insr iid="I3"/><email>J.Broen@reuma.umcn.nl</email></au>
<au id="A4"><snm>Vonk</snm><mi>C</mi><fnm>Madelon</fnm><insr iid="I3"/><email>M.Vonk@reuma.umcn.nl</email></au>
<au id="A5"><snm>Carreira</snm><fnm>Patricia</fnm><insr iid="I4"/><email>carreira@h12o.es</email></au>
<au id="A6"><snm>Camps</snm><mnm>Teresa</mnm><fnm>Maria</fnm><insr iid="I5"/><email>mtcampsg@gmail.com</email></au>
<au id="A7"><snm>Garc&#237;a-Portales</snm><fnm>Rosa</fnm><insr iid="I6"/><email>rosagaport@hotmail.com</email></au>
<au id="A8"><snm>Delgado-Fr&#237;as</snm><fnm>Esmeralda</fnm><insr iid="I7"/><email>super_esmeli@hotmail.com</email></au>
<au id="A9"><snm>Gallego</snm><fnm>Maria</fnm><insr iid="I8"/><email>luistrapiella@yahoo.es</email></au>
<au id="A10"><snm>Espinosa</snm><fnm>Gerard</fnm><insr iid="I9"/><email>GESPINO@clinic.ub.es</email></au>
<au id="A11"><cnm>the Spanish Scleroderma Group</cnm><insr iid="I10"/><email>SpanishSclerodermaGroup@gmail.com</email></au>
<au id="A12"><snm>Beretta</snm><fnm>Lorenzo</fnm><insr iid="I11"/><email>lorberimm@hotmail.com</email></au>
<au id="A13"><snm>Air&#243;</snm><fnm>Paolo</fnm><insr iid="I12"/><email>airo@bresciareumatologia.it</email></au>
<au id="A14"><snm>Lunardi</snm><fnm>Claudio</fnm><insr iid="I13"/><email>claudio.lunardi@univr.it</email></au>
<au id="A15"><snm>Riemekasten</snm><fnm>Gabriela</fnm><insr iid="I14"/><email>gabriela.riemekasten@charite.de</email></au>
<au id="A16"><snm>Witte</snm><fnm>Torsten</fnm><insr iid="I15"/><email>Witte.Torsten@mh-hannover.de</email></au>
<au id="A17"><snm>Krieg</snm><fnm>Thomas</fnm><insr iid="I16"/><email>Thomas.Krieg@uni-koeln.de</email></au>
<au id="A18"><snm>Kreuter</snm><fnm>Alexander</fnm><insr iid="I17"/><email>a.kreuter@derma.de</email></au>
<au id="A19"><snm>Distler</snm><mi>HW</mi><fnm>J&#246;rg</fnm><insr iid="I18"/><email>joerg.distler@uk-erlangen.de</email></au>
<au id="A20"><snm>Hunzelmann</snm><fnm>Nicolas</fnm><insr iid="I16"/><email>nico.hunzelmann@uni-koeln.de</email></au>
<au id="A21"><snm>Koeleman</snm><mi>P</mi><fnm>Bobby</fnm><insr iid="I19"/><email>B.P.C.Koeleman@umcutrecht.nl</email></au>
<au id="A22"><snm>Voskuyl</snm><mi>E</mi><fnm>Alexandre</fnm><insr iid="I20"/><email>AE.Voskuyl@vumc.nl</email></au>
<au id="A23"><snm>Schuerwegh</snm><mi>J</mi><fnm>Annemie</fnm><insr iid="I21"/><email>a.j.m.schuerwegh@lumc.nl</email></au>
<au id="A24"><snm>Gonz&#225;lez-Gay</snm><mnm>&#193;ngel</mnm><fnm>Miguel</fnm><insr iid="I22"/><email>miguelaggay@hotmail.com</email></au>
<au id="A25"><snm>Radstake</snm><mi>RDJ</mi><fnm>Timothy</fnm><insr iid="I23"/><email>T.Radstake@reuma.umcn.nl</email></au>
<au id="A26"><snm>Martin</snm><fnm>Javier</fnm><insr iid="I1"/><email>martin@ipb.csic.es</email></au>
</aug>
<insg>
<ins id="I1"><p>Instituto de Parasitolog&#237;a y Biomedicina L&#243;pez-Neyra, IPBLN-CSIC, Avda. del Conocimiento s/n. 18010, Granada, SpainArmilla (Granada), Spain</p></ins>
<ins id="I2"><p>Department of Internal Medicine, Hospital Valle de Hebron, Passeig de la Vall d'Hebron 119 08035 Barcelona, Spain</p></ins>
<ins id="I3"><p>Department of Rheumatology, Radboud University Nijmegen Medical Centre, Comeniuslaan 4 6525 HP Nijmegen, The Netherlands</p></ins>
<ins id="I4"><p>Department of Rheumatology, Hospital 12 de Octubre, Avda. de C&#243;rdoba s/n 28041, Madrid, Spain</p></ins>
<ins id="I5"><p>Department of Internal Medicine, Hospital Carlos Haya, Avda Carlos Haya s/n 29010 M&#225;laga, Spain</p></ins>
<ins id="I6"><p>Department of Rheumatology, Hospital Virgen de la Victoria, Campus de Teatinos s/n 29010 M&#225;laga, Spain</p></ins>
<ins id="I7"><p>Department of Rheumatology, Hospital Universitario de Canarias, Ctra. Cuesta-Taco, s/n 38320, La Cuesta, San Crist&#243;bal de La Laguna, Tenerife, Canarias, Spain</p></ins>
<ins id="I8"><p>Department of Internal Medicine, Hospital Central de Asturias, Celestino Villamil, s/n 33006 Oviedo, Spain</p></ins>
<ins id="I9"><p>Department of Autoimmune Diseases, Hospital Clinic, Carrer de Villarroel, 170 08036 Barcelona, Spain</p></ins>
<ins id="I10"><p>See Acknowledgements</p></ins>
<ins id="I11"><p>Referral Center for Systemic Autoimmune Diseases, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico Via Francesco Sforza, 35 20122 and University of Milan, Via Festa del Perdono, 7 20122, Milan, Italy</p></ins>
<ins id="I12"><p>Rheumatology Unit and Chair, Spedali Civili, Universit&#224; degli Studi, Piazzale Spedali Civili, 1 25123 Brescia, Italy</p></ins>
<ins id="I13"><p>Department of Medicine, Policlinico GB Rossi, Universit&#224; degli studi di Verona, Via dell'Artigliere, 8 37129 Verona, Italy</p></ins>
<ins id="I14"><p>Department of Rheumatology and Clinical Immunology, Charit&#233; University Hospital and German Rheumatism Research Centre, a Leibniz Institute, Charit&#233;platz 1, 10117 Berlin, Germany</p></ins>
<ins id="I15"><p>Clinic for Immunology and Rheumatology Medical School, Carl-Neuberg-Str, 1 30625, Hannover, Germany</p></ins>
<ins id="I16"><p>Department of Dermatology, University of Cologne, Kerpener Str 62, 50924 K&#246;ln, Germany</p></ins>
<ins id="I17"><p>Department of Dermatology, Allergology, and Venereology, Ruhr University of Bochum, Stiepeler Stra&#223;e 129 44801 Bochum, Germany</p></ins>
<ins id="I18"><p>Department of Internal Medicine 3, Institute for Clinical Immunology, University of Erlangen-Nuremberg, Schillerstra&#223;e 1 91054, Erlangen, Germany</p></ins>
<ins id="I19"><p>Section Complex Genetics, Department of Medical Genetics, University Medical Center Utrecht, Universiteitsweg Stratenum 3508 AB, Utrecht, The Netherlands</p></ins>
<ins id="I20"><p>Department of Rheumatology, VU University Medical Center, De Boelelaan 1117 1081 HZ Amsterdam, The Netherlands</p></ins>
<ins id="I21"><p>Department of Rheumatology, Leiden University Medical Center, Albinusdreef 2 2300 RC, Leiden, The Netherlands</p></ins>
<ins id="I22"><p>Department of Rheumatology, Hospital Universitario Marques de Valdecilla, IFIMAV, Avda. Valdecilla, 25, 39008 Santander, Spain</p></ins>
<ins id="I23"><p>Department of Rheumatology and Clinical Immunology, University Utrecht Medical Center, Universiteitsweg 100 Stratenum 3508 AB, Utrecht, The Netherlands</p></ins>
</insg>
<source>Arthritis Research &amp; Therapy</source>
<issn>1478-6354</issn>
<pubdate>2012</pubdate>
<volume>14</volume>
<issue>3</issue>
<fpage>R154</fpage>
<url>http://arthritis-research.com/content/14/3/R154</url>
<xrefbib><pubidlist><pubid idtype="doi">10.1186/ar3890</pubid><pubid idtype="pmpid">22731751</pubid></pubidlist></xrefbib>
</bibl>
<history><rec><date><day>16</day><month>3</month><year>2012</year></date></rec><revrec><date><day>23</day><month>5</month><year>2012</year></date></revrec><acc><date><day>25</day><month>6</month><year>2012</year></date></acc><pub><date><day>25</day><month>6</month><year>2012</year></date></pub></history>
<cpyrt><year>2012</year><collab>Teruel et al.; licensee BioMed Central Ltd.</collab><note>This is an open access article distributed under the terms of the Creative Commons Attribution License (<url>http://creativecommons.org/licenses/by/2.0</url>), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</note></cpyrt>
<abs>
<sec>
<st>
<p>Abstract</p>
</st>
<sec>
<st>
<p>Introduction</p>
</st>
<p>The aim of the present study was to investigate the possible role of <it>CD40 </it>and <it>CD40 ligand (CD40LG) </it>genes in the susceptibility and phenotype expression of systemic sclerosis (SSc).</p>
</sec>
<sec>
<st>
<p>Methods</p>
</st>
<p>In total, 2,670 SSc patients and 3,245 healthy individuals from four European populations (Spain, Germany, The Netherlands, and Italy) were included in the study. Five single-nucleotide polymorphisms (SNPs) of <it>CD40 </it>(rs1883832, rs4810485, rs1535045) and <it>CD40LG </it>(rs3092952, rs3092920) were genotyped by using a predesigned TaqMan allele-discrimination assay technology. Meta-analysis was assessed to determine whether an association exists between the genetic variants and SSc or its main clinical subtypes.</p>
</sec>
<sec>
<st>
<p>Results</p>
</st>
<p>No evidence of association between <it>CD40 </it>and <it>CD40LG </it>genes variants and susceptibility to SSc was observed. Similarly, no significant statistical differences were observed when SSc patients were stratified by the clinical subtypes, the serologic features, and pulmonary fibrosis.</p>
</sec>
<sec>
<st>
<p>Conclusions</p>
</st>
<p>Our results do not suggest an important role of <it>CD40 </it>and <it>CD40LG </it>gene polymorphisms in the susceptibility to or clinical expression of SSc.</p>
</sec>
</sec>
</abs>
</fm><bdy>
<sec>
<st>
<p>Introduction</p>
</st>
<p>Systemic sclerosis (SSc) is an autoimmune disease of the connective tissue characterized by excessive fibrosis of the dermis and vascular damage. It also affects internal organs, such as the lung, gastrointestinal, and vascular systems <abbrgrp>
<abbr bid="B1">1</abbr>
</abbrgrp>. SSc is a complex polygenic disease in which environmental and genetic factors are involved in the susceptibility to this disease. Candidate gene and genome-wide association studies (GWASs) performed in SSc have identified new loci implicated in the susceptibility to SSc <abbrgrp>
<abbr bid="B2">2</abbr>
</abbrgrp>. Nevertheless, the complete genetic components of SSc remain unknown.</p>
<p>CD40 is a member of the tumor necrosis factor receptor superfamily (TNFR), and it is expressed on the surface of several immune and nonhematopoietic cells, such as B cells, macrophages, dendritic cells, fibroblasts, and endothelial cells in certain pathogenic conditions <abbrgrp>
<abbr bid="B3">3</abbr>
</abbrgrp>. Its ligand, CD40LG (CD154), is expressed mainly on the surface of CD4<sup>+</sup> T cells. CD40-CD40LG interactions are necessary for the activation of both humoral and cellular immune responses <abbrgrp>
<abbr bid="B3">3</abbr>
</abbrgrp>. The CD40-CD40LG pathway has been suggested to play an important role in the pathogenesis of autoimmune diseases <abbrgrp>
<abbr bid="B4">4</abbr>
</abbrgrp>. An increase of soluble CD40LG (sCD40LG) has been observed in many autoimmune diseases, such as systemic lupus erythematosus (SLE) <abbrgrp>
<abbr bid="B5">5</abbr>
</abbrgrp>, rheumatoid arthritis (RA) <abbrgrp>
<abbr bid="B6">6</abbr>
</abbrgrp>, and Graves disease (GD) <abbrgrp>
<abbr bid="B7">7</abbr>
</abbrgrp>. Interestingly, patients with SSc and limited cutaneous disease have higher levels of sCD40LG in the plasma than those of the diffuse cutaneous disease <abbrgrp>
<abbr bid="B8">8</abbr>
</abbrgrp>. Similarly, high levels of CD40 protein were observed in both the plasma <abbrgrp>
<abbr bid="B9">9</abbr>
</abbrgrp> and the cell surface of skin fibroblasts <abbrgrp>
<abbr bid="B10">10</abbr>
</abbrgrp> from SSc patients. In addition, previous studies reported the association of <it>CD40 </it>polymorphisms with susceptibility to a number of autoimmune diseases, such as GD <abbrgrp>
<abbr bid="B11">11</abbr>
</abbrgrp>, multiple sclerosis <abbrgrp>
<abbr bid="B12">12</abbr>
</abbrgrp>, RA <abbrgrp>
<abbr bid="B13">13</abbr>
<abbr bid="B14">14</abbr>
</abbrgrp>, Crohn disease <abbrgrp>
<abbr bid="B15">15</abbr>
</abbrgrp>, and with visual ischemic manifestations in individuals with biopsy-proven giant cell arteritis <abbrgrp>
<abbr bid="B16">16</abbr>
</abbrgrp>. Nevertheless, in the case of SLE, contradictory data exist <abbrgrp>
<abbr bid="B17">17</abbr>
<abbr bid="B18">18</abbr>
<abbr bid="B19">19</abbr>
</abbrgrp>. In addition, mutations of <it>CD40LG </it>were observed in patients with the hyper-immunoglobulin M (IgM) syndrome <abbrgrp>
<abbr bid="B20">20</abbr>
</abbrgrp>, and genetic variations located at the 3UTR of the <it>CD40LG </it>gene were associated with two autoimmune diseases, SLE <abbrgrp>
<abbr bid="B21">21</abbr>
</abbrgrp> and RA <abbrgrp>
<abbr bid="B22">22</abbr>
</abbrgrp>.</p>
<p>Taking into account these considerations, we aimed to investigate the potential association of <it>CD40 </it>and <it>CD40LG </it>genes polymorphism with SSc.</p>
</sec>
<sec>
<st>
<p>Materials and methods</p>
</st>
<sec>
<st>
<p>Patients</p>
</st>
<p>In total, 2,670 SSc patients and 3,245 healthy individuals from four European populations were included in this study (Spain: cases, 1,103; controls, 1,610; Germany: cases, 554; controls, 437; The Netherlands: cases, 380; controls, 489; Italy: cases, 633; controls, 709). All the patients fulfilled the 1980 American College of Rheumatology (ACR) classification criteria for SSc <abbrgrp>
<abbr bid="B23">23</abbr>
</abbrgrp>. Limited cutaneous disease (lcSSc) was defined as definite skin thickening confined to the distal extremities, whereas cases of diffuse cutaneous disease (dcSSc) required also the involvement of skin proximal to the knees and elbow <abbrgrp>
<abbr bid="B24">24</abbr>
<abbr bid="B25">25</abbr>
</abbrgrp>. Measurement of main SSc-specific autoantibodies, anti-centromere antibodies (ACAs), and anti-topoisomerase I antibodies (ATAs), was performed by using standard methods. Pulmonary fibrosis data were investigated by using a computed tomography scan. The main features of all populations included in this study were previously reported <abbrgrp>
<abbr bid="B26">26</abbr>
<abbr bid="B27">27</abbr>
<abbr bid="B28">28</abbr>
</abbrgrp>.</p>
<p>Patients and controls were included in the study after written informed consent, according to the declaration of Helsinki. The study was approved by local ethical committees from all the participating centers.</p>
</sec>
<sec>
<st>
<p>SNPs selection and genotyping</p>
</st>
<p>DNA from patients and controls was obtained by using standard methods. <it>CD40 </it>is located on chromosome 20q13.12. Three single-nucleotide polymorphisms (SNPs) of <it>CD40 </it>associated with other autoimmune diseases were selected. rs1883832 had been associated with GD <abbrgrp>
<abbr bid="B11">11</abbr>
</abbrgrp>; whereas rs4810485, in linkage disequilibrium with rs1883832 (<it>r<sup>2 </sup>
</it>= 0.95), has been identified as a new risk factor for RA <abbrgrp>
<abbr bid="B13">13</abbr>
</abbrgrp>. Furthermore, rs1535045 has been associated with subclinical atherosclerosis in diabetes families <abbrgrp>
<abbr bid="B29">29</abbr>
</abbrgrp>. <it>CD40LG </it>is found on chromosome Xq26.3. Two genetic variants located in 5 UTR (rs3092952) and 3 UTR (rs3092920) of <it>CD40LG </it>(<it>r<sup>2 </sup>
</it>= 0.38) were selected. These SNPs are located in different haplotype blocks of <it>CD40LG </it>
<abbrgrp>
<abbr bid="B17">17</abbr>
</abbrgrp>. The variant rs3092920 is located near the 3 UTR microsatellite, which was previously associated with RA and SLE <abbrgrp>
<abbr bid="B21">21</abbr>
<abbr bid="B22">22</abbr>
</abbrgrp>; whereas rs3092952 is a functional variant related to the levels of sCD40LG in plasma <abbrgrp>
<abbr bid="B30">30</abbr>
</abbrgrp>.</p>
<p>All SNPs were genotyped in the same center by using a TaqMan SNP genotyping assay in a 7900HT Real-Time polymerase chain reaction (PCR) system, by following the conditions recommended by the manufacturer (Applied Biosystems, Foster City, CA, USA). About 10% of the patients were genotyped twice to verify the genotyping consistency, showing 99% identical genotypes. The genotyping call-rate success was &gt;95% for both cases and controls in all populations.</p>
</sec>
<sec>
<st>
<p>Statistical analysis</p>
</st>
<p>The Hardy-Weinberg equilibrium (HWE) was tested by means of the Fisher Exact test or &#967;<sup>2</sup> when necessary. The case-control association study was performed by using a 2 &#215; 2 contingency table with &#967;<sup>2</sup> to obtain <it>P </it>values, odds ratios (ORs), and 95% confidence intervals (CIs). Combined OR was calculated according to a fixed-effects model (Mantel-Haenszel meta-analysis), and the heterogeneity of OR among all populations was calculated by using the Breslow-Day test. <it>P </it>values &lt;0.05 were considered statistically significant. Statistical analyses were carried out with PLINK <abbrgrp>
<abbr bid="B31">31</abbr>
</abbrgrp>.</p>
<p>The estimation of the power of the study to detect an effect of a polymorphism in disease susceptibility was performed by using The CaTS Power Calculator software <abbrgrp>
<abbr bid="B32">32</abbr>
</abbrgrp>.</p>
</sec>
</sec>
<sec>
<st>
<p>Results</p>
</st>
<sec>
<st>
<p>
<it>CD40 </it>gene variants in SSc</p>
</st>
<p>Three <it>CD40 </it>polymorphisms were genotyped in four European populations. First, we analyzed the cohorts individually and then combined the samples in a pooled analysis. Table <tblr tid="T1">1</tblr> describes allelic distribution of the three SNPs in the pooled analysis, and Additional file <supplr sid="S1">1</supplr>, Table S1-3 contains detailed data for each population. Both cases and controls were confirmed to be in HWE in all populations. No evidence of association between <it>CD40 </it>polymorphisms and susceptibility to SSc was observed in the pooled analysis (allelic <it>P </it>value rs1883832: <it>P </it>= 0.61; OR, 1.02; 95% CI, 0.94 to 1.11; rs4810485: <it>P </it>= 0.42; OR, 1.04; 95% CI, 0.95 to 1.13; rs1535045: <it>P </it>= 0.275; OR, 0.95; 95% CI, 0.88 to 1.04).</p>
<tbl id="T1" hint_layout="single"><title><p>Table 1</p></title><caption><p>Pooled analysis of <it>CD40 </it>polymorphisms</p></caption><tblbdy cols="8">
      <r>
         <c ca="left">
            <p>
               <b>SNP</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>Change</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>Samples set</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>
                  <it>N</it>
               </b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>Minor allele,</b>
            </p>
            <p>
               <b>no. (frequency)</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b><it>P </it>value</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>OR [95% CI]</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>
                  <it>P-BD</it>
               </b>
            </p>
         </c>
      </r>
      <r>
         <c cspan="8">
            <hr/>
         </c>
      </r>
      <r>
         <c ca="left">
            <p>rs1883832</p>
         </c>
         <c ca="left">
            <p>T/C</p>
         </c>
         <c ca="left">
            <p>Controls</p>
         </c>
         <c ca="left">
            <p>3,138</p>
         </c>
         <c ca="left">
            <p>1,427 (0.277)</p>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>SSc</p>
         </c>
         <c ca="left">
            <p>2,605</p>
         </c>
         <c ca="left">
            <p>1,424 (0.274)</p>
         </c>
         <c ca="left">
            <p>0.610</p>
         </c>
         <c ca="left">
            <p>1.02 [0.94-1.11]</p>
         </c>
         <c ca="left">
            <p>0.904</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>lcSSc</p>
         </c>
         <c ca="left">
            <p>1,758</p>
         </c>
         <c ca="left">
            <p>987 (0.276)</p>
         </c>
         <c ca="left">
            <p>0.246</p>
         </c>
         <c ca="left">
            <p>1.06 [0.96-1.16]</p>
         </c>
         <c ca="left">
            <p>0.496</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>dcSSc</p>
         </c>
         <c ca="left">
            <p>860</p>
         </c>
         <c ca="left">
            <p>451 (0.271)</p>
         </c>
         <c ca="left">
            <p>0.683</p>
         </c>
         <c ca="left">
            <p>0.97 [0.86-1.10]</p>
         </c>
         <c ca="left">
            <p>0.446</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ACA +</p>
         </c>
         <c ca="left">
            <p>1,077</p>
         </c>
         <c ca="left">
            <p>592 (0.261)</p>
         </c>
         <c ca="left">
            <p>0.879</p>
         </c>
         <c ca="left">
            <p>1.01 [0.90-1.13]</p>
         </c>
         <c ca="left">
            <p>0.355</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ATA +</p>
         </c>
         <c ca="left">
            <p>716</p>
         </c>
         <c ca="left">
            <p>416 (0.293)</p>
         </c>
         <c ca="left">
            <p>0.108</p>
         </c>
         <c ca="left">
            <p>1.11 [0.98-1.26]</p>
         </c>
         <c ca="left">
            <p>0.946</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>Pulmonary fibrosis</p>
         </c>
         <c ca="left">
            <p>702</p>
         </c>
         <c ca="left">
            <p>394 (0.278)</p>
         </c>
         <c ca="left">
            <p>0.433</p>
         </c>
         <c ca="left">
            <p>1.05 [0.92-1.20]</p>
         </c>
         <c ca="left">
            <p>0.802</p>
         </c>
      </r>
      <r>
         <c cspan="8">
            <hr/>
         </c>
      </r>
      <r>
         <c ca="left">
            <p>rs4810485</p>
         </c>
         <c ca="left">
            <p>G/T</p>
         </c>
         <c ca="left">
            <p>Controls</p>
         </c>
         <c ca="left">
            <p>3,122</p>
         </c>
         <c ca="left">
            <p>1,652 (0.272)</p>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>SSc</p>
         </c>
         <c ca="left">
            <p>2,560</p>
         </c>
         <c ca="left">
            <p>1,388 (0.274)</p>
         </c>
         <c ca="left">
            <p>0.420</p>
         </c>
         <c ca="left">
            <p>1.04 [0.95-1.13]</p>
         </c>
         <c ca="left">
            <p>0.935</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>lcSSc</p>
         </c>
         <c ca="left">
            <p>1,736</p>
         </c>
         <c ca="left">
            <p>967 (0.277)</p>
         </c>
         <c ca="left">
            <p>0.155</p>
         </c>
         <c ca="left">
            <p>1.07 [0.97-1.18]</p>
         </c>
         <c ca="left">
            <p>0.481</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>dcSSc</p>
         </c>
         <c ca="left">
            <p>839</p>
         </c>
         <c ca="left">
            <p>436 (0.269)</p>
         </c>
         <c ca="left">
            <p>0.817</p>
         </c>
         <c ca="left">
            <p>0.99 [0.87-1.12]</p>
         </c>
         <c ca="left">
            <p>0.600</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ACA +</p>
         </c>
         <c ca="left">
            <p>1,071</p>
         </c>
         <c ca="left">
            <p>580 (0.257)</p>
         </c>
         <c ca="left">
            <p>0.844</p>
         </c>
         <c ca="left">
            <p>1.01 [0.90-1.13]</p>
         </c>
         <c ca="left">
            <p>0.399</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ATA +</p>
         </c>
         <c ca="left">
            <p>699</p>
         </c>
         <c ca="left">
            <p>402 (0.292)</p>
         </c>
         <c ca="left">
            <p>0.080</p>
         </c>
         <c ca="left">
            <p>1.12 [0.99-1.28]</p>
         </c>
         <c ca="left">
            <p>0.890</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>Pulmonary fibrosis</p>
         </c>
         <c ca="left">
            <p>682</p>
         </c>
         <c ca="left">
            <p>375 (0.272)</p>
         </c>
         <c ca="left">
            <p>0.483</p>
         </c>
         <c ca="left">
            <p>1.05 [0.92-1.20]</p>
         </c>
         <c ca="left">
            <p>0.605</p>
         </c>
      </r>
      <r>
         <c cspan="8">
            <hr/>
         </c>
      </r>
      <r>
         <c ca="left">
            <p>rs1535045</p>
         </c>
         <c ca="left">
            <p>T/C</p>
         </c>
         <c ca="left">
            <p>Controls</p>
         </c>
         <c ca="left">
            <p>3,147</p>
         </c>
         <c ca="left">
            <p>1,595 (0.247)</p>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>SSc</p>
         </c>
         <c ca="left">
            <p>2,585</p>
         </c>
         <c ca="left">
            <p>1,272 (0.243)</p>
         </c>
         <c ca="left">
            <p>0.275</p>
         </c>
         <c ca="left">
            <p>0.95 [0.88-1.04]</p>
         </c>
         <c ca="left">
            <p>0.560</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>lcSSc</p>
         </c>
         <c ca="left">
            <p>1,749</p>
         </c>
         <c ca="left">
            <p>860 (0.251)</p>
         </c>
         <c ca="left">
            <p>0.375</p>
         </c>
         <c ca="left">
            <p>0.96 [0.87-1.05]</p>
         </c>
         <c ca="left">
            <p>0.334</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>dcSSc</p>
         </c>
         <c ca="left">
            <p>850</p>
         </c>
         <c ca="left">
            <p>411 (0.228)</p>
         </c>
         <c ca="left">
            <p>0.275</p>
         </c>
         <c ca="left">
            <p>0.93 [0.82-1.06]</p>
         </c>
         <c ca="left">
            <p>0.746</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ACA +</p>
         </c>
         <c ca="left">
            <p>1,075</p>
         </c>
         <c ca="left">
            <p>525 (0.241)</p>
         </c>
         <c ca="left">
            <p>0.348</p>
         </c>
         <c ca="left">
            <p>0.95 [0.84-1.06]</p>
         </c>
         <c ca="left">
            <p>0.844</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ATA +</p>
         </c>
         <c ca="left">
            <p>707</p>
         </c>
         <c ca="left">
            <p>369 (0.264)</p>
         </c>
         <c ca="left">
            <p>0.669</p>
         </c>
         <c ca="left">
            <p>1.03 [0.90-1.18]</p>
         </c>
         <c ca="left">
            <p>0.640</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>Pulmonary fibrosis</p>
         </c>
         <c ca="left">
            <p>696</p>
         </c>
         <c ca="left">
            <p>340 (0.250)</p>
         </c>
         <c ca="left">
            <p>0.396</p>
         </c>
         <c ca="left">
            <p>0.94 [0.82-1.08]</p>
         </c>
         <c ca="left">
            <p>0.028</p>
         </c>
      </r>
   </tblbdy><tblfn>
      <p>Controls are used as reference for all comparisons. All <it>P </it>values have been calculated for the allelic model by using the Mantel-Haenszel test under fixed effect. P_BD, <it>P </it>value by the Breslow-Day method.</p>
   </tblfn></tbl>
<suppl id="S1">
<title>
<p>Additional file  1</p>
</title>
<text>
<p>
<b>Supplementary Tables 1 through 7</b>. Genotype and allele distribution of the <it>CD40 </it>and <it>CD40LG </it>polymorphisms for each population included in the current study.</p>
</text>
<file name="ar3890-S1.DOC">
   <p>Click here for file</p>
</file>
</suppl>
<p>To investigate the possible influence of the <it>CD40 </it>polymorphisms with clinical features, we stratified the patients according to the main SSc manifestations. However, we did not observe evidence of association after comparing lcSSc and dcSSc with healthy subjects (see Table <tblr tid="T1">1</tblr>). Additionally, we compared the presence of SSc-specific autoantibodies in the patients with the healthy individuals, but no significant differences were observed (Table <tblr tid="T1">1</tblr>). Likewise, no significant association was observed when patients with pulmonary fibrosis were compared with healthy controls (Table <tblr tid="T1">1</tblr>).</p>
</sec>
<sec>
<st>
<p>
<it>CD40LG </it>gene variants in SSc</p>
</st>
<p>Because <it>CD40LG </it>is located on the X-chromosome and shows the sexual bias of this disease, we performed the analysis separately for each gender. Table <tblr tid="T2">2</tblr> shows the allelic frequencies in SSc females of the two <it>CD40LG </it>polymorphisms in the pooled analysis, and Additional file <supplr sid="S1">1</supplr>, Table S4-5 shows the frequencies for each population. Deviations from HWE were not observed. With the Mantel-Haenzel test, the genotype and allele frequencies were similar between SSc patients and healthy individuals (allelic <it>P </it>value rs3092952: <it>P </it>= 0.44; OR, 0.96; 95% CI, 0.85 to 1.07; rs3092920: <it>P </it>= 0.565; OR, 0.96; 95% CI, 0.83 to 1.11). No statistical differences were observed when SSc patients were stratified by common subtype of the disease, the presence of SSc-specific autoantibodies, and pulmonary fibrosis (Table <tblr tid="T2">2</tblr>).</p>
<tbl id="T2" hint_layout="single"><title><p>Table 2</p></title><caption><p>Pooled analysis of <it>CD40LG </it>polymorphisms in female SSc patients and controls</p></caption><tblbdy cols="8">
      <r>
         <c ca="left">
            <p>
               <b>SNP</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>Change</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>Samples set</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>
                  <it>N</it>
               </b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>Minor allele,</b>
            </p>
            <p>
               <b>no. (frequency)</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b><it>P </it>value</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b>OR [95% CI]</b>
            </p>
         </c>
         <c ca="left">
            <p>
               <b><it>P</it>_BD</b>
            </p>
         </c>
      </r>
      <r>
         <c cspan="8">
            <hr/>
         </c>
      </r>
      <r>
         <c ca="left">
            <p>rs3092952</p>
         </c>
         <c ca="left">
            <p>G/A</p>
         </c>
         <c ca="left">
            <p>Controls</p>
         </c>
         <c ca="left">
            <p>1,795</p>
         </c>
         <c ca="left">
            <p>655 (0.176)</p>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>SSc</p>
         </c>
         <c ca="left">
            <p>2,082</p>
         </c>
         <c ca="left">
            <p>735 (0.186)</p>
         </c>
         <c ca="left">
            <p>0.440</p>
         </c>
         <c ca="left">
            <p>0.96 [0.85-1.07]</p>
         </c>
         <c ca="left">
            <p>0.18</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>lcSSc</p>
         </c>
         <c ca="left">
            <p>1,446</p>
         </c>
         <c ca="left">
            <p>515 (0.188)</p>
         </c>
         <c ca="left">
            <p>0.592</p>
         </c>
         <c ca="left">
            <p>0.97 [0.85-1.10]</p>
         </c>
         <c ca="left">
            <p>0.12</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>dcSSc</p>
         </c>
         <c ca="left">
            <p>635</p>
         </c>
         <c ca="left">
            <p>219 (0.179)</p>
         </c>
         <c ca="left">
            <p>0.307</p>
         </c>
         <c ca="left">
            <p>0.92 [0.77-1.09]</p>
         </c>
         <c ca="left">
            <p>0.73</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ACA +</p>
         </c>
         <c ca="left">
            <p>924</p>
         </c>
         <c ca="left">
            <p>338 (0.195)</p>
         </c>
         <c ca="left">
            <p>0.978</p>
         </c>
         <c ca="left">
            <p>1.00 [0.87-1.16]</p>
         </c>
         <c ca="left">
            <p>0.06</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ATA +</p>
         </c>
         <c ca="left">
            <p>533</p>
         </c>
         <c ca="left">
            <p>184 (0.188)</p>
         </c>
         <c ca="left">
            <p>0.375</p>
         </c>
         <c ca="left">
            <p>0.92 [0.77-1.11]</p>
         </c>
         <c ca="left">
            <p>0.50</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>Pulmonary fibrosis</p>
         </c>
         <c ca="left">
            <p>542</p>
         </c>
         <c ca="left">
            <p>198 (0.173)</p>
         </c>
         <c ca="left">
            <p>0.735</p>
         </c>
         <c ca="left">
            <p>0.97 [0.81-1.16]</p>
         </c>
         <c ca="left">
            <p>0.41</p>
         </c>
      </r>
      <r>
         <c cspan="8">
            <hr/>
         </c>
      </r>
      <r>
         <c ca="left">
            <p>rs3092920</p>
         </c>
         <c ca="left">
            <p>T/G</p>
         </c>
         <c ca="left">
            <p>Controls</p>
         </c>
         <c ca="left">
            <p>1,789</p>
         </c>
         <c ca="left">
            <p>376 (0.107)</p>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>SSc</p>
         </c>
         <c ca="left">
            <p>2,104</p>
         </c>
         <c ca="left">
            <p>426 (0.105)</p>
         </c>
         <c ca="left">
            <p>0.565</p>
         </c>
         <c ca="left">
            <p>0.96 [0.83-1.11]</p>
         </c>
         <c ca="left">
            <p>0.89</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>lcSSc</p>
         </c>
         <c ca="left">
            <p>1,456</p>
         </c>
         <c ca="left">
            <p>310 (0.112)</p>
         </c>
         <c ca="left">
            <p>0.929</p>
         </c>
         <c ca="left">
            <p>1.01 [0.86-1.18]</p>
         </c>
         <c ca="left">
            <p>0.97</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>dcSSc</p>
         </c>
         <c ca="left">
            <p>647</p>
         </c>
         <c ca="left">
            <p>116 (0.091)</p>
         </c>
         <c ca="left">
            <p>0.120</p>
         </c>
         <c ca="left">
            <p>0.84 [0.67-1.05]</p>
         </c>
         <c ca="left">
            <p>0.36</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ACA +</p>
         </c>
         <c ca="left">
            <p>939</p>
         </c>
         <c ca="left">
            <p>201 (0.111)</p>
         </c>
         <c ca="left">
            <p>0.924</p>
         </c>
         <c ca="left">
            <p>1.01 [0.84-1.21]</p>
         </c>
         <c ca="left">
            <p>0.48</p>
         </c>
      </r>
      <r>
         <c>
            <p/>
         </c>
         <c>
            <p/>
         </c>
         <c ca="left">
            <p>ATA +</p>
         </c>
         <c ca="left">
            <p>541</p>
         </c>
         <c ca="left">
            <p>106 (0.103)</p>
         </c>
         <c ca="left">
            <p>0.434</p>
         </c>
         <c ca="left">
            <p>0.91 [0.73-1.15]</p>
         </c>
         <c ca="left">
            <p>0.86</p>
         </c>
      </r>
      <r>
         <c ca="left">
            <p/>
         </c>
         <c ca="left">
            <p/>
         </c>
         <c ca="left">
            <p>Pulmonary fibrosis</p>
         </c>
         <c ca="left">
            <p>549</p>
         </c>
         <c ca="left">
            <p>124 (0.106)</p>
         </c>
         <c ca="left">
            <p>0.657</p>
         </c>
         <c ca="left">
            <p>1.05 [0.84-1.31]</p>
         </c>
         <c ca="left">
            <p>0.55</p>
         </c>
      </r>
   </tblbdy><tblfn>
      <p>Controls are used as reference for all comparisons. All <it>P </it>values have been calculated for the allelic model by using the Mantel-Haenszel test under fixed effect. <it>P</it>_BD, <it>P </it>value by the Breslow-Day method.</p>
   </tblfn></tbl>
<p>In addition, we analyzed these two polymorphisms in SSc male patients, but no evidence of association was found in the combined analyses (see Additional file <supplr sid="S1">1</supplr>, Table S6-7). However, these results should be interpreted with caution because the statistical power is insufficient to detect association because of low sample size.</p>
</sec>
</sec>
<sec>
<st>
<p>Discussion</p>
</st>
<p>The important role of the CD40-CD40LG pathway in autoimmunity <abbrgrp>
<abbr bid="B4">4</abbr>
</abbrgrp>, together with the association of the <it>CD40 </it>gene with a number of autoimmune diseases, prompted us to investigate for the first time the contribution of <it>CD40 </it>and <it>CD40LG </it>genes in SSc.</p>
<p>Despite the previous findings <abbrgrp>
<abbr bid="B8">8</abbr>
<abbr bid="B9">9</abbr>
<abbr bid="B10">10</abbr>
</abbrgrp>, we observed no evidence of association of the <it>CD40 </it>or <it>CD40LG </it>gene variants analyzed with SSc. It was also the case when SSc patients were stratified by the SSc clinical subtypes, specific autoantibodies, or pulmonary fibrosis. We analyzed a large European population from four different countries to increase the robustness of the study. In this regard, our combined study had an estimated power of 92% to detect the relative risk, with OR of 1.15 obtained for RA susceptibility <abbrgrp>
<abbr bid="B13">13</abbr>
<abbr bid="B14">14</abbr>
</abbrgrp>, at the 5% significance level. Therefore, it seems unlikely that the absence of association found in our study would be due to Type II error.</p>
<p>In the present study, we analyzed the functional <it>CD40</it>-1C/T polymorphism (rs1883832). This genetic variant is located at -1 from the ATG, within a Kozak sequence, a stretch of nucleotides essential for translation that flanks the start codon in vertebrate genes <abbrgrp>
<abbr bid="B33">33</abbr>
</abbrgrp>. The presence of a major allele (C) in this SNP is associated with the increase of the efficiency of CD40 translations <abbrgrp>
<abbr bid="B11">11</abbr>
</abbrgrp>. Although quantitative differences between CD40 mRNA and proteins have been observed in SSc skin fibroblasts <abbrgrp>
<abbr bid="B10">10</abbr>
</abbrgrp>, the absence of association found for rs1883832 suggests that this variant might not affect the translation of <it>CD40 </it>mRNA. This process may be upregulated in these abnormal skin fibroblasts, or other genes of the <it>CD40 </it>signaling pathway may influence the <it>CD40 </it>expression. However, functional studies in this way should be constructed before excluding an association between this variant and the <it>CD40 </it>expression in SSc.</p>
<p>Although <it>CD40 </it>might be a common susceptibility locus for some autoimmune diseases <abbrgrp>
<abbr bid="B11">11</abbr>
<abbr bid="B12">12</abbr>
<abbr bid="B13">13</abbr>
<abbr bid="B14">14</abbr>
<abbr bid="B15">15</abbr>
<abbr bid="B16">16</abbr>
</abbrgrp>, our results do not suggest an important role of <it>CD40 </it>in the susceptibility to SSc. Several genes have been recently disclosed to play a function in the susceptibility to autoimmune diseases, suggesting that these diseases share a genetic background <abbrgrp>
<abbr bid="B34">34</abbr>
</abbrgrp>. However, these loci may not be universal genetic factors for autoimmune disorders; therefore, the autoimmunity might result from specific and multiple pleiotropic effects <abbrgrp>
<abbr bid="B19">19</abbr>
</abbrgrp>. Also, other genes are unique for each disease, reflecting a specific etiology <abbrgrp>
<abbr bid="B19">19</abbr>
<abbr bid="B34">34</abbr>
</abbrgrp>. Additional studies are required for the identification of specific and shared genetic pathways that contribute to a better understanding of the pathogenesis of the autoimmune diseases.</p>
<p>The role of the <it>CD40LG </it>in the susceptibility to autoimmune diseases has not been investigated as broadly as that of <it>CD40</it>, mainly because this gene is located on the &#215; chromosome. The different prevalences of these diseases in both genders can suggest that genes located on the &#215; chromosome could be susceptibility factors in autoimmune diseases; however, few studies analyzed polymorphisms on this chromosome. Mutations on this gene are associated with X-linked hyper-IgM syndrome, a familial genetic disorder characterized by an increase of IgM level and a decrease of IgG and IgA <abbrgrp>
<abbr bid="B20">20</abbr>
</abbrgrp>, but in SLE, no evidence of association has been found <abbrgrp>
<abbr bid="B17">17</abbr>
</abbrgrp>. Similarly, our results show that the <it>CD40LG </it>gene may not be SSc susceptibility loci.</p>
</sec>
<sec>
<st>
<p>Conclusions</p>
</st>
<p>Our results do not suggest an important role of <it>CD40 </it>and <it>CD40LG </it>genes in the susceptibility to SSc. Additional studies are required to draw firm conclusions about the exact role of the <it>CD40 </it>and <it>CD40LG </it>genes in SSc susceptibility because other variants might be involved in SSc. Future studies involving other genes of the CD40-CD40LG pathway should be conducted to elucidate fully the contribution of this pathway in the pathogenesis of SSc.</p>
</sec>
<sec>
<st>
<p>Abbreviations</p>
</st>
<p>ACA: anti-centromere antibody; ATA: anti-topoisomerase I antibody; CI: confidence interval; dcSSc: diffuse cutaneous subtype; GD: Graves disease; GWAS: genome-wide association study; HWE: Hardy-Weinberg equilibrium; lcSSc: limited cutaneous subtype; OR: odds ratio; <it>P-</it>BD: <it>P </it>value by Breslow-Day method; RA: rheumatoid arthritis; SLE: systemic lupus erythematosus; SNP: single-nucleotide polymorphism; SSc: systemic sclerosis.</p>
</sec>
<sec>
<st>
<p>Competing interests</p>
</st>
<p>The authors declare that they have no competing interests.</p>
</sec>
<sec>
<st>
<p>Authors' contributions</p>
</st>
<p>MT and JM made substantial contributions to conception, design of study, and interpretation of data. MT carried out genotyping, analysis of data, and drafted the manuscript. CPS, JB, MCV, PC, MTC, RGP, EDF, MG, GE, LB, PA, CL, GR, TW, TK, AK, JHWD, NH, BPK, AEV, AJ, AJS, MAGG, TRDJR, and SSG had been involved in the acquisition of clinical data of the patients included in this study as well as the interpretation of the data. JM has been involved in revising of the final manuscript. All authors gave final approval of the version to be published.</p>
</sec>
</bdy><bm>
<ack>
<sec>
<st>
<p>Acknowledgements</p>
</st>
<p>We thank Sofia Vargas, Sonia Garcia, and Gema Robledo for their excellent technical assistance, and all the patients and healthy controls for kindly accepting their essential collaboration. We thank Banco Nacional de ADN (University of Salamanca, Spain) for supplying part of the control material. We also thank EUSTAR (The EULAR Scleroderma Trials and Research Group) and the German Network of Systemic Sclerosis for the facilitation of this project.</p>
<p>This work was supported by the following grants. JM was funded by SAF2009-11110 from the Spanish Ministry of Science, by CTS-4977 and PI-0590-2010 from Junta de Andaluc&#237;a, and by RETICS Program, RD08/0075 (RIER) from Instituto de Salud Carlos III (ISCIII), within the VI PN de I+D+i 2008-2011 (FEDER). T.R.D.J.R. was funded by the VIDI laureate from the Dutch Association of Research (NWO) and Dutch Arthritis Foundation (National Reumafonds). JM and TRDJR were sponsored by the Orphan Disease Program grant from the European League Against Rheumatism (EULAR). TW was awarded grants by DFG WI 1031/6.1 and DFG KFO 250 TP03. MT was supported by Spanish Ministry of Science through the program Juan de la Cierva (JCI-2010-08227).</p>
<p>Spanish Scleroderma Group:</p>
<p>Norberto Ortego-Centeno, Jos&#233; Luis Callejas, and Raquel R&#237;os, Systemic Autoimmune Diseases Unit, Department of Internal Medicine, Hospital Cl&#237;nico Universitario San Cecilio, Granada; Nuria Navarrete and Antonio Garcia, Department of Internal Medicine, Hospital Virgen de las Nieves, Granada; Antonio Fern&#225;ndez-Nebro, Department of Rheumatology, Hospital Carlos Haya, M&#225;laga; Mar&#237;a F. Gonz&#225;lez-Escribano, Department of Immunology, Hospital Virgen del Roc&#237;o, Sevilla; Julio S&#225;nchez-Rom&#225;n and M&#170; Jes&#250;s Castillo, Department of Internal Medicine, Hospital Virgen del Roc&#237;o, Sevilla; M&#170; &#193;ngeles Aguirre and Inmaculada G&#243;mez-Gracia, Department of Rheumatology, Hospital Reina Sof&#237;a, C&#243;rdoba; Benjam&#237;n Fern&#225;ndez-Guti&#233;rrez and Luis Rodr&#237;guez-Rodr&#237;guez, Department of Rheumatology, Hospital Cl&#237;nico San Carlos, Madrid; Esther Vicente, Department of Rheumatology, Hospital La Princesa, Madrid; M&#243;nica Fern&#225;ndez Castro and Jos&#233; Luis Andreu, Department of Rheumatology, Hospital Puerta del Hierro, Madrid; Paloma Garc&#237;a de la Pe&#241;a, Department of Rheumatology, Hospital Universitario Madrid Norte Sanchinarro, Madrid; Francisco Javier L&#243;pez-Longo and Lina Mart&#237;nez-Estupi&#241;&#225;n, Department of Rheumatology, Hospital General Universitario Gregorio Mara&#241;&#243;n, Madrid; Anna Pros, Department of Rheumatology, Hospital Del Mar, 08003 Barcelona; Vicente Fonollosa, Department of Internal Medicine, Hospital Valle de Hebr&#243;n, Barcelona; Carlos Tolosa, Department of Internal Medicine, Hospital Parc Tauli, Sabadell; M&#243;nica Rodr&#237;guez Carballeira, Department of Internal Medicine, Hospital Universitari M&#250;tua Terrasa, Barcelona; Ivan Castellv&#237;, Unidad de Reumatolog&#237;a, Department of Internal Medicine, Hospital de la Santa Creu i Sant Pau, Barcelona; Francisco Javier Narv&#225;ez, Department of Rheumatology, Hospital Universitari de Bellvitge, Barcelona; Francisco Javier Blanco-Garc&#237;a, Natividad Oreiro, and Mar&#237;a &#193;ngeles Robles, Department of Rheumatology, INIBIC-Hospital Universitario A Coru&#241;a, A Coru&#241;a; Mar&#237;a Victoria Egurbide, Department of Internal Medicine, Hospital de Cruces, Vizcaya; Luis S&#225;ez-Comet, Systemic Autoimmune Diseases Unit, Department of Internal Medicine, Hospital Universitario Miguel Servet, Zaragoza; Ricardo Blanco, Department of Rheumatology, Hospital Universitario Marqu&#233;s de Valdecilla, Santander; Bernardino D&#237;az and Luis Trapiella, Department of Internal Medicine, Hospital Central de Asturias, Oviedo; Federico D&#237;az and Vanesa Hern&#225;ndez, Department of Rheumatology, Hospital Universitario de Canarias, Tenerife; Emma Beltr&#225;n, Department of Rheumatology, Hospital del Doctor Peset Aleixandre, Valencia; and Jos&#233; Andr&#233;s Rom&#225;n-Ivorra, Department of Rheumatology, Hospital Universitari i Politecnic La Fe, Valencia.</p>
</sec>
</ack>
<refgrp><bibl id="B1"><title><p>Scleroderma</p></title><aug><au><snm>Gabrielli</snm><fnm>A</fnm></au><au><snm>Avvedimento</snm><fnm>EV</fnm></au><au><snm>Krieg</snm><fnm>T</fnm></au></aug><source>N Engl J Med</source><pubdate>2009</pubdate><volume>360</volume><fpage>1989</fpage><lpage>2003</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1056/NEJMra0806188</pubid><pubid idtype="pmpid" link="fulltext">19420368</pubid></pubidlist></xrefbib></bibl><bibl id="B2"><title><p>Unraveling the genetic component of systemic sclerosis</p></title><aug><au><snm>Martin</snm><fnm>JE</fnm></au><au><snm>Bossini-Castillo</snm><fnm>L</fnm></au><au><snm>Martin</snm><fnm>J</fnm></au></aug><source>Hum Genet</source><pubdate>2012</pubdate><volume>131</volume><fpage>1023</fpage><lpage>1037</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1007/s00439-011-1137-z</pubid><pubid idtype="pmpid" link="fulltext">22218928</pubid></pubidlist></xrefbib></bibl><bibl id="B3"><title><p>Molecular mechanism and function of CD40/CD40L engagement in the immune system</p></title><aug><au><snm>Elgueta</snm><fnm>R</fnm></au><au><snm>Benson</snm><fnm>MJ</fnm></au><au><snm>de Vries</snm><fnm>VC</fnm></au><au><snm>Wasiuk</snm><fnm>A</fnm></au><au><snm>Guo</snm><fnm>Y</fnm></au><au><snm>Noelle</snm><fnm>RJ</fnm></au></aug><source>Immunol Rev</source><pubdate>2009</pubdate><volume>229</volume><fpage>152</fpage><lpage>172</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1111/j.1600-065X.2009.00782.x</pubid><pubid idtype="pmpid" link="fulltext">19426221</pubid></pubidlist></xrefbib></bibl><bibl id="B4"><title><p>CD40 and autoimmunity: the dark side of a great activator</p></title><aug><au><snm>Peters</snm><fnm>AL</fnm></au><au><snm>Stunz</snm><fnm>LL</fnm></au><au><snm>Bishop</snm><fnm>GA</fnm></au></aug><source>Semin Immunol</source><pubdate>2009</pubdate><volume>21</volume><fpage>293</fpage><lpage>300</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1016/j.smim.2009.05.012</pubid><pubid idtype="pmcid">2753170</pubid><pubid idtype="pmpid" link="fulltext">19595612</pubid></pubidlist></xrefbib></bibl><bibl id="B5"><title><p>Elevated levels and functional capacity of soluble CD40 ligand in systemic lupus erythematosus sera</p></title><aug><au><snm>Vakkalanka</snm><fnm>RK</fnm></au><au><snm>Woo</snm><fnm>C</fnm></au><au><snm>Kirou</snm><fnm>KA</fnm></au><au><snm>Koshy</snm><fnm>M</fnm></au><au><snm>Berger</snm><fnm>D</fnm></au><au><snm>Crow</snm><fnm>MK</fnm></au></aug><source>Arthritis Rheum</source><pubdate>1999</pubdate><volume>42</volume><fpage>871</fpage><lpage>881</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1002/1529-0131(199905)42:5&lt;871::AID-ANR5&gt;3.0.CO;2-J</pubid><pubid idtype="pmpid" link="fulltext">10323442</pubid></pubidlist></xrefbib></bibl><bibl id="B6"><title><p>Soluble CD154 in rheumatoid arthritis: elevated plasma levels in cases with vasculitis</p></title><aug><au><snm>Tamura</snm><fnm>N</fnm></au><au><snm>Kobayashi</snm><fnm>S</fnm></au><au><snm>Kato</snm><fnm>K</fnm></au><au><snm>Bando</snm><fnm>H</fnm></au><au><snm>Haruta</snm><fnm>K</fnm></au><au><snm>Oyanagi</snm><fnm>M</fnm></au><au><snm>Kuriyama</snm><fnm>M</fnm></au><au><snm>Kipps</snm><fnm>TJ</fnm></au><au><snm>Hashimoto</snm><fnm>H</fnm></au></aug><source>J Rheumatol</source><pubdate>2001</pubdate><volume>28</volume><fpage>2583</fpage><lpage>2590</lpage><xrefbib><pubid idtype="pmpid" link="fulltext">11764201</pubid></xrefbib></bibl><bibl id="B7"><title><p>Coexpression of CD40 and class II antigen HLA-DR in Graves' disease thyroid epithelial cells</p></title><aug><au><snm>Faure</snm><fnm>GC</fnm></au><au><snm>Bensoussan-Lejzerowicz</snm><fnm>D</fnm></au><au><snm>Bene</snm><fnm>MC</fnm></au><au><snm>Aubert</snm><fnm>V</fnm></au><au><snm>Leclere</snm><fnm>J</fnm></au></aug><source>Clin Immunol Immunopathol</source><pubdate>1997</pubdate><volume>84</volume><fpage>212</fpage><lpage>215</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1006/clin.1997.4391</pubid><pubid idtype="pmpid" link="fulltext">9245555</pubid></pubidlist></xrefbib></bibl><bibl id="B8"><title><p>Increased plasma soluble CD40 ligand concentrations in systemic sclerosis and association with pulmonary arterial hypertension and digital ulcers</p></title><aug><au><snm>Allanore</snm><fnm>Y</fnm></au><au><snm>Borderie</snm><fnm>D</fnm></au><au><snm>Meune</snm><fnm>C</fnm></au><au><snm>Lemarechal</snm><fnm>H</fnm></au><au><snm>Weber</snm><fnm>S</fnm></au><au><snm>Ekindjian</snm><fnm>OG</fnm></au><au><snm>Kahan</snm><fnm>A</fnm></au></aug><source>Ann Rheum Dis</source><pubdate>2005</pubdate><volume>64</volume><fpage>481</fpage><lpage>483</lpage><xrefbib><pubidlist><pubid idtype="pmcid">1755392</pubid><pubid idtype="pmpid" link="fulltext">15708899</pubid></pubidlist></xrefbib></bibl><bibl id="B9"><title><p>Increased serum soluble CD40 levels in patients with systemic sclerosis</p></title><aug><au><snm>Komura</snm><fnm>K</fnm></au><au><snm>Fujimoto</snm><fnm>M</fnm></au><au><snm>Matsushita</snm><fnm>T</fnm></au><au><snm>Yanaba</snm><fnm>K</fnm></au><au><snm>Kodera</snm><fnm>M</fnm></au><au><snm>Kawasuji</snm><fnm>A</fnm></au><au><snm>Hasegawa</snm><fnm>M</fnm></au><au><snm>Takehara</snm><fnm>K</fnm></au><au><snm>Sato</snm><fnm>S</fnm></au></aug><source>J Rheumatol</source><pubdate>2007</pubdate><volume>34</volume><fpage>353</fpage><lpage>358</lpage><xrefbib><pubid idtype="pmpid" link="fulltext">17295440</pubid></xrefbib></bibl><bibl id="B10"><title><p>Increased CD40 expression in skin fibroblasts from patients with systemic sclerosis (SSc): role of CD40-CD154 in the phenotype of SSc fibroblasts</p></title><aug><au><snm>Fukasawa</snm><fnm>C</fnm></au><au><snm>Kawaguchi</snm><fnm>Y</fnm></au><au><snm>Harigai</snm><fnm>M</fnm></au><au><snm>Sugiura</snm><fnm>T</fnm></au><au><snm>Takagi</snm><fnm>K</fnm></au><au><snm>Kawamoto</snm><fnm>M</fnm></au><au><snm>Hara</snm><fnm>M</fnm></au><au><snm>Kamatani</snm><fnm>N</fnm></au></aug><source>Eur J Immunol</source><pubdate>2003</pubdate><volume>33</volume><fpage>2792</fpage><lpage>2800</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1002/eji.200324088</pubid><pubid idtype="pmpid" link="fulltext">14515263</pubid></pubidlist></xrefbib></bibl><bibl id="B11"><title><p>A Graves' disease-associated Kozak sequence single-nucleotide polymorphism enhances the efficiency of CD40 gene translation: a case for translational pathophysiology</p></title><aug><au><snm>Jacobson</snm><fnm>EM</fnm></au><au><snm>Concepcion</snm><fnm>E</fnm></au><au><snm>Oashi</snm><fnm>T</fnm></au><au><snm>Tomer</snm><fnm>Y</fnm></au></aug><source>Endocrinology</source><pubdate>2005</pubdate><volume>146</volume><fpage>2684</fpage><lpage>2691</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1210/en.2004-1617</pubid><pubid idtype="pmpid" link="fulltext">15731360</pubid></pubidlist></xrefbib></bibl><bibl id="B12"><title><p>Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20</p></title><aug><au><cnm>ANZgene</cnm></au></aug><source>Nat Genet</source><pubdate>2009</pubdate><volume>41</volume><fpage>824</fpage><lpage>828</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1038/ng.396</pubid><pubid idtype="pmpid" link="fulltext">19525955</pubid></pubidlist></xrefbib></bibl><bibl id="B13"><title><p>Common variants at CD40 and other loci confer risk of rheumatoid arthritis</p></title><aug><au><snm>Raychaudhuri</snm><fnm>S</fnm></au><au><snm>Remmers</snm><fnm>EF</fnm></au><au><snm>Lee</snm><fnm>AT</fnm></au><au><snm>Hackett</snm><fnm>R</fnm></au><au><snm>Guiducci</snm><fnm>C</fnm></au><au><snm>Burtt</snm><fnm>NP</fnm></au><au><snm>Gianniny</snm><fnm>L</fnm></au><au><snm>Korman</snm><fnm>BD</fnm></au><au><snm>Padyukov</snm><fnm>L</fnm></au><au><snm>Kurreeman</snm><fnm>FA</fnm></au><au><snm>Chang</snm><fnm>M</fnm></au><au><snm>Catanese</snm><fnm>JJ</fnm></au><au><snm>Ding</snm><fnm>B</fnm></au><au><snm>Wong</snm><fnm>S</fnm></au><au><snm>van der Helm-van</snm><fnm>Mil AH</fnm></au><au><snm>Neale</snm><fnm>BM</fnm></au><au><snm>Coblyn</snm><fnm>J</fnm></au><au><snm>Cui</snm><fnm>J</fnm></au><au><snm>Tak</snm><fnm>PP</fnm></au><au><snm>Wolbink</snm><fnm>GJ</fnm></au><au><snm>Crusius</snm><fnm>JB</fnm></au><au><snm>van der Horst-Bruinsma</snm><fnm>IE</fnm></au><au><snm>Criswell</snm><fnm>LA</fnm></au><au><snm>Amos</snm><fnm>CI</fnm></au><au><snm>Seldin</snm><fnm>MF</fnm></au><au><snm>Kastner</snm><fnm>DL</fnm></au><au><snm>Ardlie</snm><fnm>KG</fnm></au><au><snm>Alfredsson</snm><fnm>L</fnm></au><au><snm>Costenbader</snm><fnm>KH</fnm></au><au><snm>Altshuler</snm><fnm>D</fnm></au><etal/></aug><source>Nat Genet</source><pubdate>2008</pubdate><volume>40</volume><fpage>1216</fpage><lpage>1223</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1038/ng.233</pubid><pubid idtype="pmcid">2757650</pubid><pubid idtype="pmpid" link="fulltext">18794853</pubid></pubidlist></xrefbib></bibl><bibl id="B14"><title><p>Association of CD40 with rheumatoid arthritis confirmed in a large UK case-control study</p></title><aug><au><snm>Orozco</snm><fnm>G</fnm></au><au><snm>Eyre</snm><fnm>S</fnm></au><au><snm>Hinks</snm><fnm>A</fnm></au><au><snm>Ke</snm><fnm>X</fnm></au><au><cnm>Wellcome Trust Case Control consortium YEAR Consortium</cnm></au><au><snm>Wilson</snm><fnm>AG</fnm></au><au><snm>Bax</snm><fnm>DE</fnm></au><au><snm>Morgan</snm><fnm>AW</fnm></au><au><snm>Emery</snm><fnm>P</fnm></au><au><snm>Steer</snm><fnm>S</fnm></au><au><snm>Hocking</snm><fnm>L</fnm></au><au><snm>Reid</snm><fnm>DM</fnm></au><au><snm>Wordsworth</snm><fnm>P</fnm></au><au><snm>Harrison</snm><fnm>P</fnm></au><au><snm>Thomson</snm><fnm>W</fnm></au><au><snm>Barton</snm><fnm>A</fnm></au><au><snm>Worthington</snm><fnm>J</fnm></au></aug><source>Ann Rheum Dis</source><pubdate>2009</pubdate><volume>69</volume><fpage>813</fpage><lpage>816</lpage><xrefbib><pubidlist><pubid idtype="pmcid">3009392</pubid><pubid idtype="pmpid" link="fulltext">19435719</pubid></pubidlist></xrefbib></bibl><bibl id="B15"><title><p><it>CD40: </it>novel association with crohn's disease and replication in multiple sclerosis susceptibility</p></title><aug><au><snm>Blanco-Kelly</snm><fnm>F</fnm></au><au><snm>Matesanz</snm><fnm>F</fnm></au><au><snm>Alcina</snm><fnm>A</fnm></au><au><snm>Teruel</snm><fnm>M</fnm></au><au><snm>D&#237;az-Gallo</snm><fnm>LM</fnm></au><au><snm>G&#243;mez-Garc&#237;a</snm><fnm>M</fnm></au><au><snm>L&#243;pez-Nevot</snm><fnm>MA</fnm></au><au><snm>Rodrigo</snm><fnm>L</fnm></au><au><snm>Nieto</snm><fnm>A</fnm></au><au><snm>Carde&#241;a</snm><fnm>C</fnm></au><au><snm>Alcain</snm><fnm>G</fnm></au><au><snm>D&#237;az-Rubio</snm><fnm>M</fnm></au><au><snm>de la Concha</snm><fnm>EG</fnm></au><au><snm>Fernandez</snm><fnm>O</fnm></au><au><snm>Arroyo</snm><fnm>R</fnm></au><au><snm>Mart&#237;n</snm><fnm>J</fnm></au><au><snm>Urcelay</snm><fnm>E</fnm></au></aug><source>PLoS One</source><pubdate>2010</pubdate><volume>5</volume><fpage>e11520</fpage><xrefbib><pubidlist><pubid idtype="doi">10.1371/journal.pone.0011520</pubid><pubid idtype="pmcid">2902513</pubid><pubid idtype="pmpid" link="fulltext">20634952</pubid></pubidlist></xrefbib></bibl><bibl id="B16"><title><p>Influence of CD40 rs1883832 polymorphism in susceptibility to and clinical manifestations of biopsy-proven giant cell arteritis</p></title><aug><au><snm>Rodr&#237;guez-Rodr&#237;guez</snm><fnm>L</fnm></au><au><snm>Casta&#241;eda</snm><fnm>S</fnm></au><au><snm>V&#225;zquez-Rodr&#237;guez</snm><fnm>TR</fnm></au><au><snm>Morado</snm><fnm>IC</fnm></au><au><snm>Mar&#237;-Alfonso</snm><fnm>B</fnm></au><au><snm>G&#243;mez-Vaquero</snm><fnm>C</fnm></au><au><snm>Miranda-Filloy</snm><fnm>JA</fnm></au><au><snm>Narvaez</snm><fnm>J</fnm></au><au><snm>Ortego-Centeno</snm><fnm>N</fnm></au><au><snm>Blanco</snm><fnm>R</fnm></au><au><snm>Fern&#225;ndez-Guti&#233;rrez</snm><fnm>B</fnm></au><au><snm>Mart&#237;n</snm><fnm>J</fnm></au><au><snm>Gonz&#225;lez-Gay</snm><fnm>MA</fnm></au></aug><source>J Rheumatol</source><pubdate>2010</pubdate><volume>37</volume><fpage>2076</fpage><lpage>2080</lpage><xrefbib><pubidlist><pubid idtype="doi">10.3899/jrheum.100362</pubid><pubid idtype="pmpid" link="fulltext">20682661</pubid></pubidlist></xrefbib></bibl><bibl id="B17"><title><p>Haplotype structure of TNFRSF5-TNFSF5 (CD40-CD40L) and association analysis in systemic lupus erythematosus</p></title><aug><au><snm>Chadha</snm><fnm>S</fnm></au><au><snm>Miller</snm><fnm>K</fnm></au><au><snm>Farwell</snm><fnm>L</fnm></au><au><snm>Lightstone</snm><fnm>LB</fnm></au><au><snm>Daly</snm><fnm>MJ</fnm></au><au><snm>Rioux</snm><fnm>JD</fnm></au><au><snm>Vyse</snm><fnm>TJ</fnm></au></aug><source>Eur J Hum Genet</source><pubdate>2005</pubdate><volume>13</volume><fpage>669</fpage><lpage>676</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1038/sj.ejhg.5201367</pubid><pubid idtype="pmpid" link="fulltext">15657613</pubid></pubidlist></xrefbib></bibl><bibl id="B18"><title><p>A common SNP in the CD40 region is associated with systemic lupus erythematosus and correlates with altered CD40 expression: implications for the pathogenesis</p></title><aug><au><snm>Vazgiourakis</snm><fnm>VM</fnm></au><au><snm>Zervou</snm><fnm>MI</fnm></au><au><snm>Choulaki</snm><fnm>C</fnm></au><au><snm>Bertsias</snm><fnm>G</fnm></au><au><snm>Melissourgaki</snm><fnm>M</fnm></au><au><snm>Yilmaz</snm><fnm>N</fnm></au><au><snm>Sidiropoulos</snm><fnm>P</fnm></au><au><snm>Plant</snm><fnm>D</fnm></au><au><snm>Trouw</snm><fnm>LA</fnm></au><au><snm>Toes</snm><fnm>RE</fnm></au><au><snm>Kardassis</snm><fnm>D</fnm></au><au><snm>Yavuz</snm><fnm>S</fnm></au><au><snm>Boumpas</snm><fnm>DT</fnm></au><au><snm>Goulielmos</snm><fnm>GN</fnm></au></aug><source>Ann Rheum Dis</source><pubdate>2011</pubdate><volume>70</volume><fpage>2184</fpage><lpage>2190</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1136/ard.2010.146530</pubid><pubid idtype="pmpid" link="fulltext">21914625</pubid></pubidlist></xrefbib></bibl><bibl id="B19"><title><p>A comprehensive analysis of shared loci between systemic lupus erythematosus (SLE) and sixteen autoimmune diseases reveals limited genetic overlap</p></title><aug><au><snm>Ramos</snm><fnm>PS</fnm></au><au><snm>Criswell</snm><fnm>LA</fnm></au><au><snm>Moser</snm><fnm>KL</fnm></au><au><snm>Comeau</snm><fnm>ME</fnm></au><au><snm>Williams</snm><fnm>AH</fnm></au><au><snm>Pajewski</snm><fnm>NM</fnm></au><au><snm>Chung</snm><fnm>SA</fnm></au><au><snm>Graham</snm><fnm>RR</fnm></au><au><snm>Zidovetzki</snm><fnm>R</fnm></au><au><snm>Kelly</snm><fnm>JA</fnm></au><au><snm>Kaufman</snm><fnm>KM</fnm></au><au><snm>Jacob</snm><fnm>CO</fnm></au><au><snm>Vyse</snm><fnm>TJ</fnm></au><au><snm>Tsao</snm><fnm>BP</fnm></au><au><snm>Kimberly</snm><fnm>RP</fnm></au><au><snm>Gaffney</snm><fnm>PM</fnm></au><au><snm>Alarc&#243;n-Riquelme</snm><fnm>ME</fnm></au><au><snm>Harley</snm><fnm>JB</fnm></au><au><snm>Langefeld</snm><fnm>CD</fnm></au><au><cnm>International Consortium on the Genetics of Systemic Erythematosus</cnm></au></aug><source>PLoS Genet</source><pubdate>2011</pubdate><volume>7</volume><fpage>e1002406</fpage><xrefbib><pubidlist><pubid idtype="doi">10.1371/journal.pgen.1002406</pubid><pubid idtype="pmcid">3234215</pubid><pubid idtype="pmpid" link="fulltext">22174698</pubid></pubidlist></xrefbib></bibl><bibl id="B20"><title><p>Hyper immunoglobulin M syndrome due to CD40 deficiency: clinical, molecular, and immunological features</p></title><aug><au><snm>Lougaris</snm><fnm>V</fnm></au><au><snm>Badolato</snm><fnm>R</fnm></au><au><snm>Ferrari</snm><fnm>S</fnm></au><au><snm>Plebani</snm><fnm>A</fnm></au></aug><source>Immunol Rev</source><pubdate>2005</pubdate><volume>203</volume><fpage>48</fpage><lpage>66</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1111/j.0105-2896.2005.00229.x</pubid><pubid idtype="pmpid" link="fulltext">15661021</pubid></pubidlist></xrefbib></bibl><bibl id="B21"><title><p>Association of the microsatellite in the 3' untranslated region of the CD154 gene with rheumatoid arthritis in females from a Spanish cohort: a case-control study</p></title><aug><au><snm>Martin-Donaire</snm><fnm>T</fnm></au><au><snm>Losada-Fernandez</snm><fnm>I</fnm></au><au><snm>Perez-Chacon</snm><fnm>G</fnm></au><au><snm>Rua-Figueroa</snm><fnm>I</fnm></au><au><snm>Erausquin</snm><fnm>C</fnm></au><au><snm>Naranjo-Hernandez</snm><fnm>A</fnm></au><au><snm>Rosado</snm><fnm>S</fnm></au><au><snm>Sanchez</snm><fnm>F</fnm></au><au><snm>Garcia-Saavedra</snm><fnm>A</fnm></au><au><snm>Citores</snm><fnm>MJ</fnm></au><au><snm>Vargas</snm><fnm>JA</fnm></au><au><snm>Perez-Aciego</snm><fnm>P</fnm></au></aug><source>Arthritis Res Ther</source><pubdate>2007</pubdate><volume>9</volume><fpage>R89</fpage><xrefbib><pubidlist><pubid idtype="doi">10.1186/ar2288</pubid><pubid idtype="pmcid">2212561</pubid><pubid idtype="pmpid" link="fulltext">17845713</pubid></pubidlist></xrefbib></bibl><bibl id="B22"><title><p>The dinucleotide repeat polymorphism in the 3'UTR of the CD154 gene has a functional role on protein expression and is associated with systemic lupus erythematosus</p></title><aug><au><snm>Citores</snm><fnm>MJ</fnm></au><au><snm>Rua-Figueroa</snm><fnm>I</fnm></au><au><snm>Rodriguez-Gallego</snm><fnm>C</fnm></au><au><snm>Durantez</snm><fnm>A</fnm></au><au><snm>Garcia-Laorden</snm><fnm>MI</fnm></au><au><snm>Rodriguez-Lozano</snm><fnm>C</fnm></au><au><snm>Rodriguez-Perez</snm><fnm>JC</fnm></au><au><snm>Vargas</snm><fnm>JA</fnm></au><au><snm>Perez-Aciego</snm><fnm>P</fnm></au></aug><source>Ann Rheum Dis</source><pubdate>2004</pubdate><volume>63</volume><fpage>310</fpage><lpage>317</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1136/ard.2003.006148</pubid><pubid idtype="pmcid">1754911</pubid><pubid idtype="pmpid" link="fulltext">14962968</pubid></pubidlist></xrefbib></bibl><bibl id="B23"><title><p>Preliminary criteria for the classification of systemic sclerosis (scleroderma)</p></title><aug><au><cnm>Subcommittee for scleroderma criteria of the American Rheumatism Association Diagnostic and Therapeutic Criteria Committee</cnm></au></aug><source>Arthritis Rheum</source><pubdate>1980</pubdate><volume>23</volume><fpage>581</fpage><lpage>590</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1002/art.1780230510</pubid><pubid idtype="pmpid">7378088</pubid></pubidlist></xrefbib></bibl><bibl id="B24"><title><p>Scleroderma (systemic sclerosis): classification, subsets and pathogenesis</p></title><aug><au><snm>LeRoy</snm><fnm>EC</fnm></au><au><snm>Black</snm><fnm>C</fnm></au><au><snm>Fleischmajer</snm><fnm>R</fnm></au><au><snm>Jablonska</snm><fnm>S</fnm></au><au><snm>Krieg</snm><fnm>T</fnm></au><au><snm>Medsger</snm><fnm>TA</fnm><suf>Jr</suf></au><au><snm>Rowell</snm><fnm>N</fnm></au><au><snm>Wollheim</snm><fnm>F</fnm></au></aug><source>J Rheumatol</source><pubdate>1988</pubdate><volume>15</volume><fpage>202</fpage><lpage>205</lpage><xrefbib><pubid idtype="pmpid">3361530</pubid></xrefbib></bibl><bibl id="B25"><title><p>Criteria for the classification of early systemic sclerosis</p></title><aug><au><snm>LeRoy</snm><fnm>EC</fnm></au><au><snm>Medsger</snm><fnm>TA</fnm><suf>Jr</suf></au></aug><source>J Rheumatol</source><pubdate>2001</pubdate><volume>28</volume><fpage>1573</fpage><lpage>1576</lpage><xrefbib><pubid idtype="pmpid" link="fulltext">11469464</pubid></xrefbib></bibl><bibl id="B26"><title><p>Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus</p></title><aug><au><snm>Radstake</snm><fnm>TR</fnm></au><au><snm>Gorlova</snm><fnm>O</fnm></au><au><snm>Rueda</snm><fnm>B</fnm></au><au><snm>Martin</snm><fnm>JE</fnm></au><au><snm>Alizadeh</snm><fnm>BZ</fnm></au><au><snm>Palomino-Morales</snm><fnm>R</fnm></au><au><snm>Coenen</snm><fnm>MJ</fnm></au><au><snm>Vonk</snm><fnm>MC</fnm></au><au><snm>Voskuyl</snm><fnm>AE</fnm></au><au><snm>Schuerwegh</snm><fnm>AJ</fnm></au><au><snm>Broen</snm><fnm>JC</fnm></au><au><snm>van Riel</snm><fnm>PL</fnm></au><au><snm>van &apos;t Slot</snm><fnm>R</fnm></au><au><snm>Italiaander</snm><fnm>A</fnm></au><au><snm>Ophoff</snm><fnm>RA</fnm></au><au><snm>Riemekasten</snm><fnm>G</fnm></au><au><snm>Hunzelmann</snm><fnm>N</fnm></au><au><snm>Simeon</snm><fnm>CP</fnm></au><au><snm>Ortego-Centeno</snm><fnm>N</fnm></au><au><snm>Gonz&#225;lez-Gay</snm><fnm>MA</fnm></au><au><snm>Gonz&#225;lez-Escribano</snm><fnm>MF</fnm></au><au><cnm>Spanish Scleroderma Group</cnm></au><au><snm>Airo</snm><fnm>P</fnm></au><au><snm>van Laar</snm><fnm>J</fnm></au><au><snm>Herrick</snm><fnm>A</fnm></au><au><snm>Worthington</snm><fnm>J</fnm></au><au><snm>Hesselstrand</snm><fnm>R</fnm></au><au><snm>Smith</snm><fnm>V</fnm></au><au><snm>de Keyser</snm><fnm>F</fnm></au><au><snm>Houssiau</snm><fnm>F</fnm></au><etal/></aug><source>Nat Genet</source><pubdate>2010</pubdate><volume>42</volume><fpage>426</fpage><lpage>429</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1038/ng.565</pubid><pubid idtype="pmcid">2861917</pubid><pubid idtype="pmpid" link="fulltext">20383147</pubid></pubidlist></xrefbib></bibl><bibl id="B27"><title><p>Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy</p></title><aug><au><snm>Gorlova</snm><fnm>O</fnm></au><au><snm>Martin</snm><fnm>JE</fnm></au><au><snm>Rueda</snm><fnm>B</fnm></au><au><snm>Koeleman</snm><fnm>BP</fnm></au><au><snm>Ying</snm><fnm>J</fnm></au><au><snm>Teruel</snm><fnm>M</fnm></au><au><snm>Diaz-Gallo</snm><fnm>LM</fnm></au><au><snm>Broen</snm><fnm>JC</fnm></au><au><snm>Vonk</snm><fnm>MC</fnm></au><au><snm>Simeon</snm><fnm>CP</fnm></au><au><snm>Alizadeh</snm><fnm>BZ</fnm></au><au><snm>Coenen</snm><fnm>MJ</fnm></au><au><snm>Voskuyl</snm><fnm>AE</fnm></au><au><snm>Schuerwegh</snm><fnm>AJ</fnm></au><au><snm>van Riel</snm><fnm>PL</fnm></au><au><snm>Vanthuyne</snm><fnm>M</fnm></au><au><snm>van &apos;t Slot</snm><fnm>R</fnm></au><au><snm>Italiaander</snm><fnm>A</fnm></au><au><snm>Ophoff</snm><fnm>RA</fnm></au><au><snm>Hunzelmann</snm><fnm>N</fnm></au><au><snm>Fonollosa</snm><fnm>V</fnm></au><au><snm>Ortego-Centeno</snm><fnm>N</fnm></au><au><snm>Gonz&#225;lez-Gay</snm><fnm>MA</fnm></au><au><snm>Garc&#237;a-Hern&#225;ndez</snm><fnm>FJ</fnm></au><au><snm>Gonz&#225;lez-Escribano</snm><fnm>MF</fnm></au><au><snm>Airo</snm><fnm>P</fnm></au><au><snm>van Laar</snm><fnm>J</fnm></au><au><snm>Worthington</snm><fnm>J</fnm></au><au><snm>Hesselstrand</snm><fnm>R</fnm></au><au><snm>Smith</snm><fnm>V</fnm></au><etal/></aug><source>PLoS Genet</source><pubdate>2011</pubdate><volume>7</volume><fpage>e1002178</fpage><xrefbib><pubidlist><pubid idtype="doi">10.1371/journal.pgen.1002178</pubid><pubid idtype="pmcid">3136437</pubid><pubid idtype="pmpid" link="fulltext">21779181</pubid></pubidlist></xrefbib></bibl><bibl id="B28"><title><p>A GWAS follow-up study reveals the association of the IL12RB2 gene with systemic sclerosis in Caucasian populations</p></title><aug><au><snm>Bossini-Castillo</snm><fnm>L</fnm></au><au><snm>Martin</snm><fnm>JE</fnm></au><au><snm>Broen</snm><fnm>J</fnm></au><au><snm>Gorlova</snm><fnm>O</fnm></au><au><snm>Sime&#243;n</snm><fnm>CP</fnm></au><au><snm>Beretta</snm><fnm>L</fnm></au><au><snm>Vonk</snm><fnm>MC</fnm></au><au><snm>Callejas</snm><fnm>JL</fnm></au><au><snm>Castellv&#237;</snm><fnm>I</fnm></au><au><snm>Carreira</snm><fnm>P</fnm></au><au><snm>Garc&#237;a-Hern&#225;ndez</snm><fnm>FJ</fnm></au><au><snm>Fern&#225;ndez Castro</snm><fnm>M</fnm></au><au><cnm>Spanish Scleroderma Group</cnm></au><au><snm>Coenen</snm><fnm>MJ</fnm></au><au><snm>Riemekasten</snm><fnm>G</fnm></au><au><snm>Witte</snm><fnm>T</fnm></au><au><snm>Hunzelmann</snm><fnm>N</fnm></au><au><snm>Kreuter</snm><fnm>A</fnm></au><au><snm>Distler</snm><fnm>JH</fnm></au><au><snm>Koeleman</snm><fnm>BP</fnm></au><au><snm>Voskuyl</snm><fnm>AE</fnm></au><au><snm>Schuerwegh</snm><fnm>AJ</fnm></au><au><snm>Palm</snm><fnm>&#216;</fnm></au><au><snm>Hesselstrand</snm><fnm>R</fnm></au><au><snm>Nordin</snm><fnm>A</fnm></au><au><snm>Air&#243;</snm><fnm>P</fnm></au><au><snm>Lunardi</snm><fnm>C</fnm></au><au><snm>Scorza</snm><fnm>R</fnm></au><au><snm>Shiels</snm><fnm>P</fnm></au><au><snm>van Laar</snm><fnm>JM</fnm></au><etal/></aug><source>Hum Mol Genet</source><pubdate>2012</pubdate><volume>21</volume><fpage>926</fpage><lpage>933</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1093/hmg/ddr522</pubid><pubid idtype="pmpid" link="fulltext">22076442</pubid></pubidlist></xrefbib></bibl><bibl id="B29"><title><p>Variants of the CD40 gene but not of the CD40L gene are associated with coronary artery calcification in the Diabetes Heart Study (DHS)</p></title><aug><au><snm>Burdon</snm><fnm>KP</fnm></au><au><snm>Langefeld</snm><fnm>CD</fnm></au><au><snm>Beck</snm><fnm>SR</fnm></au><au><snm>Wagenknecht</snm><fnm>LE</fnm></au><au><snm>Carr</snm><fnm>JJ</fnm></au><au><snm>Rich</snm><fnm>SS</fnm></au><au><snm>Freedman</snm><fnm>BI</fnm></au><au><snm>Herrington</snm><fnm>D</fnm></au><au><snm>Bowden</snm><fnm>DW</fnm></au></aug><source>Am Heart J</source><pubdate>2006</pubdate><volume>151</volume><fpage>706</fpage><lpage>711</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1016/j.ahj.2005.05.004</pubid><pubid idtype="pmpid" link="fulltext">16504636</pubid></pubidlist></xrefbib></bibl><bibl id="B30"><title><p>Soluble CD40L levels are regulated by the -3459 A>G polymorphism and predict myocardial infarction and the efficacy of antithrombotic treatment in non-ST elevation acute coronary syndrome</p></title><aug><au><snm>Malarstig</snm><fnm>A</fnm></au><au><snm>Lindahl</snm><fnm>B</fnm></au><au><snm>Wallentin</snm><fnm>L</fnm></au><au><snm>Siegbahn</snm><fnm>A</fnm></au></aug><source>Arterioscler Thromb Vasc Biol</source><pubdate>2006</pubdate><volume>26</volume><fpage>1667</fpage><lpage>1673</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1161/01.ATV.0000222908.78873.36</pubid><pubid idtype="pmpid" link="fulltext">16627810</pubid></pubidlist></xrefbib></bibl><bibl id="B31"><title><p>PLINK: a tool set for whole-genome association and population-based linkage analyses</p></title><aug><au><snm>Purcell</snm><fnm>S</fnm></au><au><snm>Neale</snm><fnm>B</fnm></au><au><snm>Todd-Brown</snm><fnm>K</fnm></au><au><snm>Thomas</snm><fnm>L</fnm></au><au><snm>Ferreira</snm><fnm>MA</fnm></au><au><snm>Bender</snm><fnm>D</fnm></au><au><snm>Maller</snm><fnm>J</fnm></au><au><snm>Sklar</snm><fnm>P</fnm></au><au><snm>de Bakker</snm><fnm>PI</fnm></au><au><snm>Daly</snm><fnm>MJ</fnm></au><au><snm>Sham</snm><fnm>PC</fnm></au></aug><source>Am J Hum Genet</source><pubdate>2007</pubdate><volume>81</volume><fpage>559</fpage><lpage>575</lpage><url>http://pngu.mgh.harvard.edu/~purcell/plink/</url><xrefbib><pubidlist><pubid idtype="doi">10.1086/519795</pubid><pubid idtype="pmcid">1950838</pubid><pubid idtype="pmpid" link="fulltext">17701901</pubid></pubidlist></xrefbib></bibl><bibl id="B32"><title><p>Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies</p></title><aug><au><snm>Skol</snm><fnm>AD</fnm></au><au><snm>Scott</snm><fnm>LJ</fnm></au><au><snm>Abecasis</snm><fnm>GR</fnm></au><au><snm>Boehnke</snm><fnm>M</fnm></au></aug><source>Nat Genet</source><pubdate>2006</pubdate><volume>38</volume><fpage>209</fpage><lpage>213</lpage><url>http://www.sph.umich.edu/csg/abecasis/CaTS/</url><xrefbib><pubidlist><pubid idtype="doi">10.1038/ng1706</pubid><pubid idtype="pmpid" link="fulltext">16415888</pubid></pubidlist></xrefbib></bibl><bibl id="B33"><title><p>An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs</p></title><aug><au><snm>Kozak</snm><fnm>M</fnm></au></aug><source>Nucleic Acids Res</source><pubdate>1987</pubdate><volume>15</volume><fpage>8125</fpage><lpage>8148</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1093/nar/15.20.8125</pubid><pubid idtype="pmcid">306349</pubid><pubid idtype="pmpid" link="fulltext">3313277</pubid></pubidlist></xrefbib></bibl><bibl id="B34"><title><p>Genomics and the multifactorial nature of human autoimmune disease</p></title><aug><au><snm>Cho</snm><fnm>JH</fnm></au><au><snm>Gregersen</snm><fnm>PK</fnm></au></aug><source>N Engl J Med</source><pubdate>2011</pubdate><volume>365</volume><fpage>1612</fpage><lpage>1623</lpage><xrefbib><pubidlist><pubid idtype="doi">10.1056/NEJMra1100030</pubid><pubid idtype="pmpid" link="fulltext">22029983</pubid></pubidlist></xrefbib></bibl></refgrp>
</bm></art>