Table 3

Predicted SOX9 binding sites in candidate genesa

Gene
Conserved SOX9 binding site, relative to transcription start site
Transcription start site (bp position based on homo sapiens genome build 35.1)

APOD
+2998 bp to +3011 bp +3110 bp to +3123 bp
CHR3_RANDOM:544561
GAPDH
None passed criteria
CHR12:6513945
RGC32
+2534 bp to +2547 bp
CHR13:40929712
SPINT1
-1183 bp to -1170 bp
CHR15:38923534
SRPX
+3939 bp to +3952 bp +5628 bp to +5641 bp +15773 bp to +15786 bp
CHRX:37836348

aBase pair (bp) positions are given relative to the transcription start site of each gene. In all instances, positive numbers describe sites within the first intron of the gene.

Tew et al. Arthritis Research & Therapy 2007 9:R107   doi:10.1186/ar2311