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GenBank accession numbers and primer sequences |
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| Gene/primer (GenBank accession number) |
Forward |
Reverse |
|
|
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| GAPDH (NM_002046) |
ACCCAGAAGACTGTGGATGG |
CAGTGAGCTTCCCGTTCAG |
| ADAMTS4 (NM_005099) |
GGCTACTACTATGTGCTGGAGC |
TCCGCACACCATGCACTTGTCA |
| ADM (NM_001124) |
GGATGAAGCTGGTTTCCGTC |
GACTCAGAGCCCACTTATTC |
| ADFP (NM_001122) |
GTTGCCAATACCTATGCCTG |
CAGTAGTCGTCACAGCATCT |
| CD14 (NM_000591) |
GAGGTTCGGAAGACTTATCG |
ATCTTCATCGTCCAGCTCAC |
| COL4A1 (NM_001845) |
TAGAGAGGAGCGAGATGTTC |
GTGACATTAGCTGAGTCAGG |
| CTNNB1 (NM_001904) |
GGTGCTATCTGTCTGCTCTAGT |
GACGTTGACTTGGATCTGTCAGG |
| FST (NM_006350) |
GGCAAGATGTAAAGAGCAGC |
CATTATTGGTCTGGTCCACC |
| GADD45B (NM_015675) |
TTGCAACATGACGCTGGAAG |
CATTCATCAACTTGGCCGAC |
| IBSP (NM_004967) |
CAATCCAGCTTCCCAAGAAG |
CTTCTGCTTCGCTTTCTTCG |
| INHBA (NM_002192) |
GAACTTATGGAGCAGACCTC |
TGCCTTCCTTGGAAATCTCG |
| INSIG1 (NM_005542) |
TGTATCGACAGTCACCTCGGA |
GGACAGCTGGACATTATTGGC |
| ITGB2 (NM_000211)) |
AAGTGACGCTTTACCTGCGA |
CCTGAGGTCATCAAGCATGG |
| KLF6 (NM_001300) |
TGTGCAGCATCTTCCAGGAG |
AACGTTCCAGCTCTAGGCAG |
| MEPE (NM_020203) |
GCAAAGCTGTGTGGAAGAGCAGA |
CCCTTATTCTCACTGGCTTCAG |
| MMP25 (NM_004142) |
ATGTCACCGTCAGCAACGCA |
CGGTCTTGATGCTGTTCTTG |
| MT2A (NM_005953) |
GCAAATGCACCTCCTGCAAG |
GTGGAAGTCGCGTTCTTTAC |
| NHERF1 (NM_004252) |
TCACCAATGGGGAGATACAG |
GTCTTGGGAATTCAGCTCCT |
| PTEN (NM_000314) |
AAGACAAAGCCAACCGATAC |
GAAGTTGAACTGCTAGCCTC |
| RUNX2 (NM_004348) |
TGATGACACTGCCACCTCTG |
GGGATGAAATGCTTGGGAAC |
| S100A4 (NM_002961) |
GTCAGAACTAAAGGAGCTGC |
TGTTGCTGTCCAAGTTGCTC |
| SMAD3 (NM_005902) |
TTCAACAACCAGGAGTTCGC |
TACTGGTCACAGTA |
| STC1 (NM_003155) |
CCTGTGACACAGATGGGATG |
GAATGGCGAGGAAGACCTTG |
| TIMP4 (NM_003256) |
TTGACTGGTCAGGTCCTCAGT |
GGTACTGTGTAGCAGGTGGT |
| TWIST1 (NM_000474) |
TCAGCAGGGCCGGAGACCTAGAT |
GTCTGGGAATCACTGTCCAC |
| WNT5B (AY009399) |
ACCCTACTCTGGAAACTGTC |
TAAACATCTCGGGTCTCTGC |
|
'Slide' indicates the microarray slide comparison. Slides 1 to 10 are control (CTL)-osteoarthritis (OA) female sample pairs, slides 11 to 20 are CTL-OA male sample pairs, slides 21 to 30 are OA-osteoporosis (OP) female sample pairs and slides 32 to 40 are CTL-OP female sample pairs. GEO, Gene Expression Omnibus; ID, individual/sample. | ||
Hopwood et al. Arthritis Research & Therapy 2007 9:R100 doi:10.1186/ar2301 |
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