Table 2

Single-nucleotide polymorphisms used to compute the genetic risk score

Chromosome

Locus name

SNP markers


1

CD2/CD58

rs11586238


1

FCGR2A

rs12746613


1

MMEL1/TNFRSF14

rs10910099


1

PTPN22

rs2476601


1

PTPRC

rs10919563


2

AFF3

rs10865035


2

CD28

rs1980422


2

CTLA4

rs3087243


2

REL

rs13031237


2

STAT4

rs7574865


3

DNASE1L3/PXK

rs13315591


4

IL2/IL21

rs6822844


4

RBPJ

rs874040


5

GIN1/C5orf30

rs26232


6

CCR6

rs3093023


6

HLA-DRB1 0401 tag

rs6910071


6

PRDM1

rs548234


6

TAGAP

rs394581


6

TNFAIP3 locus 1

rs6920220


6

TNFAIP3 locus 2

rs13192841


6

TNFAIP3 locus 3

rs5029937


8

BLK

rs2736340


9

CCL21

rs2812378


9

TRAF1/C5

rs10760130


10

IL2RA

rs2104286


10

PRKCQ

rs4750316


12

KIF5A/PIP4K2C

rs1678542


20

CD40

rs4810485


22

IL2RB

rs3218258


The 28 non-HLA independent rheumatoid arthritis confirmed susceptibility single-nucleotide polymorphisms (SNPs) plus the HLA-DRB1*0401 tag from the meta-analysis by Stahl and colleagues [1] or proxies (in italics in the third colomn) used in the present study are shown here.

Viatte et al. Arthritis Research & Therapy 2012 14:R239   doi:10.1186/ar4082

Open Data