Table 3 |
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Overlapping peptide set derived from chicken-origin collagen type II fragment number 11 after cyanobromide digestion |
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|
Name |
Amino acid numbersa |
Amino acid sequence 1234567890123456789012345 |
|
|
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|
pep 1 |
124 to 149 |
GPRGLPGERGRPGPSGAAGARGNDG |
|
pep 2 |
140 to 165 |
GAAGARGNDGLPGPAGPPGPVGPAG |
|
pep 3 |
155 to 180 |
GPPGPVGPAGAPGFPGAPGSKGEAG |
|
pep 4 |
170 to 195 |
GAPGSKGEAGPTGARGPEGAQGPRG |
|
pep 5 |
185 to 210 |
GPEGAQGPRGESGTPGSPGPAGAPG |
|
pep 6 |
200 to 225 |
GSPGPAGAPGNPGTDGIPGAKGSAG |
|
pep 7 |
215 to 240 |
GIPGAKGSAGAPGIAGAPGFPGPRG |
|
pep 8 |
230 to 255 |
GAPGFPGPRGPPGPQGATGPLGPKG |
|
pep 9 |
245 to 270 |
GATGPLGPKGQTGEPGIAGFKGEQG |
|
pep 10a |
251 to 276 |
GPKGQTGEPGIAGFKGEQGPKGETG |
|
pep 11 |
260 to 285 |
GIAGFKGEQGPKGETGPAGPQGAPG |
|
pep 12 |
275 to 300 |
GPAGPQGAPGPAGEEGKRGARGEPG |
|
pep 13 |
290 to 315 |
GKRGARGEPGAAGPVGPPGERGAPG |
|
pep 14 |
305 to 330 |
GPPGERGAPGNRGFPGQDGLAGPKG |
|
pep 15 |
320 to 345 |
GQDGLAGPKGAPGERGPAGLAGPKG |
|
pep 16 |
335 to 360 |
GPAGLAGPKGATGDPGRPGEPGLPG |
|
pep 17 |
350 to 375 |
GRPGEPGLPGARGLTGRPGDAGPQG |
|
pep 18 |
365 to 380 |
GRPGDAGPQGKVGPTGAPGEDGRPG |
|
pep 19 |
370 to 395 |
GAPGEDGRPGPPGPQGARGQPGVMG |
|
pep 20 |
374 to 400 |
EDGRPGPPGPQGARGQPGVMGFPGP |
|
|
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Overlapping peptide set derived from chicken-origin collagen type II (ch-CII) fragment number 11 after cyanobromide digestion and separation on high-performance liquid chromatography (CB11; ch-CIIaa 124 to 402). ach-CII amino acid 124 = aa1. bThis peptide contains the immunodominant glycopeptide [29]. |
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Vierboom et al. Arthritis Research & Therapy 2010 12:R200 doi:10.1186/ar3172 |
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