Table 3

Overlapping peptide set derived from chicken-origin collagen type II fragment number 11 after cyanobromide digestion

Name

Amino acid numbersa

Amino acid sequence

1234567890123456789012345


pep 1

124 to 149

GPRGLPGERGRPGPSGAAGARGNDG

pep 2

140 to 165

GAAGARGNDGLPGPAGPPGPVGPAG

pep 3

155 to 180

GPPGPVGPAGAPGFPGAPGSKGEAG

pep 4

170 to 195

GAPGSKGEAGPTGARGPEGAQGPRG

pep 5

185 to 210

GPEGAQGPRGESGTPGSPGPAGAPG

pep 6

200 to 225

GSPGPAGAPGNPGTDGIPGAKGSAG

pep 7

215 to 240

GIPGAKGSAGAPGIAGAPGFPGPRG

pep 8

230 to 255

GAPGFPGPRGPPGPQGATGPLGPKG

pep 9

245 to 270

GATGPLGPKGQTGEPGIAGFKGEQG

pep 10a

251 to 276

GPKGQTGEPGIAGFKGEQGPKGETG

pep 11

260 to 285

GIAGFKGEQGPKGETGPAGPQGAPG

pep 12

275 to 300

GPAGPQGAPGPAGEEGKRGARGEPG

pep 13

290 to 315

GKRGARGEPGAAGPVGPPGERGAPG

pep 14

305 to 330

GPPGERGAPGNRGFPGQDGLAGPKG

pep 15

320 to 345

GQDGLAGPKGAPGERGPAGLAGPKG

pep 16

335 to 360

GPAGLAGPKGATGDPGRPGEPGLPG

pep 17

350 to 375

GRPGEPGLPGARGLTGRPGDAGPQG

pep 18

365 to 380

GRPGDAGPQGKVGPTGAPGEDGRPG

pep 19

370 to 395

GAPGEDGRPGPPGPQGARGQPGVMG

pep 20

374 to 400

EDGRPGPPGPQGARGQPGVMGFPGP


Overlapping peptide set derived from chicken-origin collagen type II (ch-CII) fragment number 11 after cyanobromide digestion and separation on high-performance liquid chromatography (CB11; ch-CIIaa 124 to 402). ach-CII amino acid 124 = aa1. bThis peptide contains the immunodominant glycopeptide [29].

Vierboom et al. Arthritis Research & Therapy 2010 12:R200   doi:10.1186/ar3172

Open Data