Table 2 |
||||
|
Interferon response gene/transcript sets used in this study |
||||
|
IFN set (34 genes) |
Validation (15 genes) |
Symbol |
NCBI mRNA accession number |
Name |
|
|
||||
|
X |
AA075725 |
AA075725.1 |
None |
|
|
X |
AA142842 |
AA142842.1 |
None |
|
|
X |
AI347124 |
AI347124.1 |
None |
|
|
X |
ATF3 |
NM_001030287 |
Activating transcription factor 3 |
|
|
X |
EIF2AK2 |
NM_001135651 |
Eukaryotic translation initiation factor 2-alpha kinase 2 |
|
|
X |
X |
EPSTI1 |
NM_001002264 |
Epithelial stromal interaction 1 (breast) |
|
X |
Hs.128576 |
NM_001135993 |
CDNA FLJ90394 fis, clone NT2RP2005632 |
|
|
X |
Hs.97872 |
AI821640 |
Transcribed locus |
|
|
X |
IFI16 |
NM_005531 |
Interferon, gamma-inducible protein 16 |
|
|
X |
X |
IFI35 |
NM_005533 |
Interferon-induced protein 35 |
|
X |
X |
IFI44L |
NM_006820 |
Interferon-induced protein 44-like |
|
X |
X |
IFI6 |
NM_002038 |
Interferon, alpha-inducible protein 6 |
|
X |
X |
IFIT1 |
NM_001548 |
Interferon-induced protein with tetratricopeptide repeats 1 |
|
X |
IFIT2 |
NM_001547 |
Interferon-induced protein with tetratricopeptide repeats 2 |
|
|
X |
X |
IFITM1 |
NM_003641 |
Interferon-induced transmembrane protein 1 (9-27) |
|
X |
IL1RN |
NM_000577 |
Interleukin 1 receptor antagonist |
|
|
X |
X |
IRF2 |
NM_002199 |
Interferon regulatory factor 2 |
|
X |
IRF7 |
NM_001572 |
Interferon regulatory factor 7 |
|
|
X |
X |
ISG15 |
NM_005101 |
ISG15 ubiquitin-like modifier |
|
X |
X |
LGALS3BP |
NM_005567 |
Lectin, galactoside-binding, soluble, 3 binding protein |
|
X |
MX1 |
NM_001144925 |
Myxovirus (influenza virus) resistance 1 |
|
|
X |
X |
MX2 |
NM_002463 |
Myxovirus (influenza virus) resistance 2 (mouse) |
|
X |
X |
OAS1 |
NM_001032409 |
2',5' -oligoadenylate synthetase 1, 40/46 kDa |
|
X |
X |
OAS2 |
NM_001032731 |
2' -5' -oligoadenylate synthetase 2, 69/71 kDa |
|
X |
PARP14 |
NM_017554 |
Poly (ADP-ribose) polymerase family, member 14 |
|
|
X |
PLSCR1 |
NM_021105 |
Phospholipid scramblase 1 |
|
|
X |
RNF213 |
NM_020914 |
Ring finger protein 213 |
|
|
X |
X |
RSAD2 |
NM_080657 |
Radical S-adenosyl methionine domain containing 2 (alias cig5) |
|
X |
RTP4 |
NM_022147 |
Receptor (chemosensory) transporter protein 4 |
|
|
X |
X |
SAMD9L |
NM_152703 |
Sterile alpha motif domain containing 9-like |
|
X |
X |
SERPING1 |
NM_000062 |
Serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 |
|
X |
TAP1 |
NM_000593 |
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) |
|
|
X |
TNFAIP6 |
NM_007115 |
Tumor necrosis factor, alpha-induced protein 6 |
|
|
X |
UBE2L6 |
NM_004223 |
Ubiquitin-conjugating enzyme E2L 6 |
|
|
|
||||
|
IFN, interferon; NCBI, National Center for Biotechnology Information. |
||||
|
van Baarsen et al. Arthritis Research & Therapy 2010 12:R11 doi:10.1186/ar2912 |
||||
