Table 1

Minor allele frequencies and P values for 52 tag single nucleotide polymorphisms in the STAT1-STAT4 region in the first screening

Minor allele frequency

SNP

Chromosomal positiona

Minor allele

SLE patients (n = 105)

Controls (n = 102)

P value


rs3771300

191543841

C

0.305

0.309

0.929

rs7575823

191544163

A

0.167

0.147

0.584

rs16824035

191545879

A

0.057

0.074

0.500

rs1914408

191548221

A

0.271

0.314

0.344

rs2066804

191550004

A

0.471

0.480

0.855

rs2280235

191552075

A

0.486

0.471

0.758

rs3755312

191554236

C

0.181

0.176

0.905

rs2280234

191558344

G

0.162

0.186

0.513

rs2280232

191559011

C

0.143

0.123

0.543

rs11887698

191563119

G

0.327

0.304

0.629

rs7562024

191563766

G

0.090

0.108

0.554

rs11904548

191567235

A

0.162

0.137

0.482

rs12693591

191568747

A

0.257

0.235

0.606

rs16833155

191569622

A

0.043

0.054

0.600

rs2066805

191571146

G

0.038

0.054

0.442

rs11677408

191574860

A

0.129

0.108

0.514

rs2030171

191577408

G

0.329

0.309

0.666

rs11693463

191578156

G

0.195

0.196

0.983

rs11885069

191578869

A

0.162

0.137

0.482

rs10199181

191581798

T

0.267

0.265

0.964

rs2066802

191582912

G

0.257

0.255

0.956

rs13029532

191584146

C

0.082

0.103

0.457

rs3024904

191603447

A

0.112

0.141

0.400

rs3024936

191603621

C

0.024

0.055

0.112

rs1517351

191604290

C

0.490

0.464

0.602

rs3024896

191604961

A

0.448

0.412

0.461

rs925847

191605785

A

0.538

0.490

0.330

rs3024886

191608694

A

0.457

0.417

0.407

rs6715106

191621279

G

0.067

0.083

0.520

rs16833215

191622044

G

0.495

0.441

0.270

rs1400654

191623918

T

0.066

0.083

0.524

rs3024861

191632851

T

0.471

0.397

0.127

rs1517352

191639709

A

0.481

0.397

0.086

rs10168266

191644049

A

0.400

0.245

7.6 × 10-4

rs7594501

191646845

A

0.114

0.152

0.250

rs16833239

191648505

A

0.110

0.152

0.200

rs7601754

191648696

G

0.129

0.178

0.162

rs11889341

191651987

A

0.443

0.299

0.003

rs16833249

191656517

G

0.567

0.480

0.079

rs6434435

191662109

A

0.099

0.141

0.192

rs7574865

191672878

A

0.471

0.324

0.002

rs12463658

191673589

C

0.581

0.471

0.025

rs6752770

191681808

G

0.205

0.245

0.326

rs1551443

191704763

A

0.238

0.206

0.431

rs2356350

191710783

G

0.510

0.407

0.036

rs10189819

191716994

G

0.133

0.118

0.630

rs7596818

191717555

A

0.320

0.295

0.580

rs11685878

191717700

A

0.429

0.431

0.954

rs12991409

191717762

G

0.100

0.113

0.674

rs12327969

191719016

G

0.390

0.402

0.811

rs12988825

191722509

C

0.119

0.132

0.683

rs7572482

191723317

G

0.490

0.461

0.545


aChromosomal positions are shown according to the National Center for Biotechnology Information (Bethesda, MD, USA) reference assembly. SLE, systemic lupus erythematosus; SNP, single nucleotide polymorphism; STAT, signal transducers and activators of transcription.

Kawasaki et al. Arthritis Research & Therapy 2008 10:R113   doi:10.1186/ar2516

Open Data